Variant report

Variant	rs12443006
Chromosome Location	chr15:57602783-57602784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57602461..57607778-chr15:57612282..57619576,11	K562	blood:
2	chr15:57595866..57598853-chr15:57602406..57604089,3	K562	blood:
3	chr15:57601950..57604007-chr15:57607354..57609319,2	K562	blood:
4	chr15:57600919..57606103-chr15:57620754..57624822,5	K562	blood:
5	chr15:57599033..57602011-chr15:57602301..57604910,2	MCF-7	breast:
6	chr15:57598904..57601336-chr15:57602570..57606633,5	K562	blood:
7	chr15:57595866..57598518-chr15:57602406..57603938,2	K562	blood:

Variant related genes	Relation type
ENSG00000247982	Chromatin interaction
ENSG00000260870	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10518910	0.82[EUR][1000 genomes]
rs1122890	0.80[EUR][1000 genomes]
rs12438324	0.86[EUR][1000 genomes]
rs12438782	0.86[EUR][1000 genomes]
rs12439374	0.86[EUR][1000 genomes]
rs12441107	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12443076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12443097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17239522	0.86[EUR][1000 genomes]
rs17239543	0.87[EUR][1000 genomes]
rs17820131	0.86[EUR][1000 genomes]
rs2414499	0.80[EUR][1000 genomes]
rs8024992	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599000-57603000	Weak transcription	K562	blood
2	chr15:57599400-57604600	Weak transcription	Right Ventricle	heart
3	chr15:57599400-57605000	Weak transcription	Fetal Brain Female	brain
4	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:57599600-57603800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:57599600-57604600	Weak transcription	Fetal Thymus	thymus
7	chr15:57599600-57604600	Weak transcription	Left Ventricle	heart
8	chr15:57599600-57604600	Weak transcription	Pancreas	Pancrea
9	chr15:57599600-57604600	Weak transcription	Psoas Muscle	Psoas
10	chr15:57599600-57604600	Weak transcription	Right Atrium	heart
11	chr15:57599600-57604800	Weak transcription	Fetal Brain Male	brain
12	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
14	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
15	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
16	chr15:57599800-57603000	Strong transcription	Primary B cells from cord blood	blood
17	chr15:57600000-57604400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:57600200-57603000	Weak transcription	Stomach Mucosa	stomach
19	chr15:57600200-57604400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:57600200-57605000	Weak transcription	Fetal Kidney	kidney
21	chr15:57600600-57604200	Weak transcription	Fetal Lung	lung
22	chr15:57600800-57603800	Weak transcription	HepG2	liver
23	chr15:57601400-57603000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:57601400-57605200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:57602000-57602800	Enhancers	Placenta	Placenta
26	chr15:57602000-57605600	Enhancers	Fetal Stomach	stomach
27	chr15:57602000-57605800	Enhancers	Fetal Muscle Trunk	muscle
28	chr15:57602000-57606800	Enhancers	Fetal Intestine Large	intestine
29	chr15:57602400-57602800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr15:57602400-57604000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr15:57602400-57604800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:57602400-57605000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr15:57602400-57606800	Enhancers	Fetal Intestine Small	intestine
34	chr15:57602400-57607200	Enhancers	Fetal Muscle Leg	muscle
35	chr15:57602600-57602800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr15:57602600-57603000	Enhancers	Brain Germinal Matrix	brain
37	chr15:57602600-57603200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:57602600-57604000	Enhancers	Gastric	stomach
39	chr15:57602600-57604600	Weak transcription	Primary B cells from peripheral blood	blood

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