Variant report

Variant	rs12441107
Chromosome Location	chr15:57610610-57610611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1122890	1.00[AFR][1000 genomes]
rs12438324	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12438331	1.00[AFR][1000 genomes]
rs12438782	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12438954	1.00[AFR][1000 genomes]
rs12439374	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12440878	1.00[AFR][1000 genomes]
rs12443006	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12443076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12443097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16977521	1.00[AFR][1000 genomes]
rs17239522	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17239543	1.00[AFR][1000 genomes]
rs17820077	1.00[AFR][1000 genomes]
rs17820119	1.00[AFR][1000 genomes]
rs17820131	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2414499	1.00[AFR][1000 genomes]
rs8024992	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
4	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
5	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
6	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:57603200-57611400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:57604200-57612800	Weak transcription	Primary B cells from cord blood	blood
9	chr15:57605000-57619400	Weak transcription	Pancreas	Pancrea
10	chr15:57605600-57611000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:57605600-57611800	Weak transcription	Fetal Stomach	stomach
12	chr15:57605600-57612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:57605600-57612400	Weak transcription	Fetal Brain Male	brain
14	chr15:57605600-57612800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:57605600-57614400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:57606400-57611200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:57606800-57611000	Weak transcription	Fetal Intestine Large	intestine
18	chr15:57609400-57612400	Weak transcription	Right Atrium	heart
19	chr15:57610400-57611000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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