Variant report

Variant	rs8024992
Chromosome Location	chr15:57590203-57590204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57582135..57584182-chr15:57589221..57591985,2	K562	blood:
2	chr15:57582041..57585604-chr15:57586782..57591985,5	K562	blood:
3	chr15:57588417..57590307-chr15:57592744..57595404,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1122890	0.82[AMR][1000 genomes]
rs12438324	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12438331	0.81[AMR][1000 genomes]
rs12438782	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12439374	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12441107	0.83[EUR][1000 genomes]
rs12443006	0.86[EUR][1000 genomes]
rs12443076	0.86[EUR][1000 genomes]
rs12443097	0.86[EUR][1000 genomes]
rs17239522	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17820119	0.81[AMR][1000 genomes]
rs17820131	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2414499	0.82[AMR][1000 genomes]
rs2591050	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv526342	chr15:57565859-57597280	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
2	chr15:57566000-57591600	Weak transcription	Esophagus	oesophagus
3	chr15:57568000-57590600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:57568200-57591600	Weak transcription	Psoas Muscle	Psoas
5	chr15:57578600-57591600	Weak transcription	Spleen	Spleen
6	chr15:57578600-57598200	Weak transcription	Right Ventricle	heart
7	chr15:57578800-57592800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:57579200-57592800	Weak transcription	Small Intestine	intestine
9	chr15:57579600-57598200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:57579800-57590400	Weak transcription	Brain Angular Gyrus	brain
11	chr15:57579800-57595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:57580000-57598400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:57580000-57598400	Weak transcription	Fetal Brain Male	brain
14	chr15:57580000-57598400	Weak transcription	NHEK	skin
15	chr15:57580600-57594800	Weak transcription	HepG2	liver
16	chr15:57581000-57591600	Weak transcription	NHLF	lung
17	chr15:57581200-57591000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:57581400-57590800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:57581600-57595000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:57581800-57590600	Weak transcription	NH-A	brain
21	chr15:57583200-57591600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr15:57583200-57591800	Weak transcription	Placenta	Placenta
23	chr15:57583400-57590600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:57583400-57595000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:57583400-57598400	Weak transcription	Thymus	Thymus
26	chr15:57583600-57590400	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:57583600-57590400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:57583600-57598000	Weak transcription	Liver	Liver
29	chr15:57583600-57598200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:57583600-57598400	Weak transcription	A549	lung
31	chr15:57583800-57590400	Weak transcription	Fetal Lung	lung
32	chr15:57583800-57591000	Weak transcription	Ovary	ovary
33	chr15:57583800-57595400	Weak transcription	Aorta	Aorta
34	chr15:57583800-57596800	Weak transcription	Fetal Intestine Large	intestine
35	chr15:57584000-57590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:57584000-57598200	Weak transcription	Brain Germinal Matrix	brain
37	chr15:57584200-57591000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:57584400-57590600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:57584400-57598000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:57584400-57598200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:57584600-57591000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:57584600-57591000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:57584600-57591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:57584600-57594600	Weak transcription	Primary T cells from cord blood	blood
45	chr15:57584600-57598200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:57584600-57598200	Weak transcription	Fetal Stomach	stomach
47	chr15:57585000-57591400	Weak transcription	Fetal Thymus	thymus
48	chr15:57585000-57591800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:57585000-57598400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:57585400-57590600	Weak transcription	HSMM	muscle

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