Variant report

Variant	rs10519229
Chromosome Location	chr15:49747753-49747754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1055254	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11070707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1114003	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs12901416	1.00[CHB][hapmap]
rs12902107	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12902794	1.00[CHB][hapmap]
rs1354919	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1546424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1546425	1.00[CHB][hapmap]
rs1580996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1580997	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962236	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16962237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs16962238	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962244	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16962256	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16962257	1.00[CHB][hapmap];1.00[GIH][hapmap]
rs16962259	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16962262	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962273	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962274	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16962288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962307	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs16962314	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16962327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16962331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs16962416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16962425	1.00[EUR][1000 genomes]
rs17396612	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs17476940	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs1835227	1.00[AMR][1000 genomes]
rs1874614	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2059935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs2078024	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2127243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2169931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2279192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2413947	0.82[ASN][1000 genomes]
rs2413958	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2413963	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2899437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362337	1.00[JPT][hapmap]
rs4396481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4774539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7168633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7173759	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs7178101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73398258	0.86[EUR][1000 genomes]
rs8029506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8031680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8040436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs967892	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs967893	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv526246	chr15:49738233-49749735	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49732000-49750200	Weak transcription	HSMM	muscle
2	chr15:49737000-49751200	Weak transcription	Ovary	ovary
3	chr15:49742000-49752000	Weak transcription	Adipose Nuclei	Adipose
4	chr15:49742800-49748000	Weak transcription	Fetal Heart	heart
5	chr15:49742800-49750400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:49743000-49748000	Weak transcription	Fetal Lung	lung
7	chr15:49743200-49748400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:49745000-49748200	Weak transcription	NHLF	lung
9	chr15:49746200-49747800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:49747200-49749000	Enhancers	Colon Smooth Muscle	Colon
11	chr15:49747200-49749200	Enhancers	Rectal Smooth Muscle	rectum
12	chr15:49747200-49751400	Enhancers	NHDF-Ad	bronchial
13	chr15:49747200-49752600	Enhancers	Osteobl	bone
14	chr15:49747400-49748400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:49747400-49753000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:49747600-49748200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:49747600-49751400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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