Variant report

Variant	rs7168633
Chromosome Location	chr15:49557518-49557519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10519211	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10519221	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10519229	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1055254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1114003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11630318	0.83[EUR][1000 genomes]
rs11632038	0.82[EUR][1000 genomes]
rs11633282	0.80[EUR][1000 genomes]
rs11634636	0.83[EUR][1000 genomes]
rs11635005	0.83[EUR][1000 genomes]
rs11638606	0.80[EUR][1000 genomes]
rs16962065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962067	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962112	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962146	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962187	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs16962189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962237	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962257	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs16962259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16962296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962416	1.00[CHB][hapmap]
rs17396612	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17396747	0.83[EUR][1000 genomes]
rs17397211	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17475228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17476361	0.83[EUR][1000 genomes]
rs17476940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17477722	0.80[EUR][1000 genomes]
rs1835227	0.85[ASN][1000 genomes]
rs2059935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2078024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2127243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2163097	0.85[ASN][1000 genomes]
rs2169931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2279192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2899437	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35692325	0.83[EUR][1000 genomes]
rs3784630	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3959659	0.85[ASN][1000 genomes]
rs57252806	0.80[EUR][1000 genomes]
rs57560518	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57749497	0.83[EUR][1000 genomes]
rs59112977	0.80[EUR][1000 genomes]
rs59356430	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493354	0.85[ASN][1000 genomes]
rs7162633	0.81[EUR][1000 genomes]
rs7165168	0.81[EUR][1000 genomes]
rs7167474	0.83[EUR][1000 genomes]
rs7167852	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7173759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7176949	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7178101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7179094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7179907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7181656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7183899	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73392233	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73392262	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73394324	0.83[EUR][1000 genomes]
rs73394331	0.83[EUR][1000 genomes]
rs73394333	0.83[EUR][1000 genomes]
rs73394339	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73394355	0.83[EUR][1000 genomes]
rs73394357	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73394359	0.82[EUR][1000 genomes]
rs73396206	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73396235	0.80[EUR][1000 genomes]
rs73398223	0.81[EUR][1000 genomes]
rs73398243	0.81[EUR][1000 genomes]
rs8025550	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027094	0.80[EUR][1000 genomes]
rs8028746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8029506	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8030457	0.81[EUR][1000 genomes]
rs8031680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8033311	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8035829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8035901	0.85[ASN][1000 genomes]
rs8039469	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569365	chr15:49545009-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv569375	chr15:49545192-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7168633	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
2	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
3	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
4	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:49535600-49564600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:49535800-49563400	Weak transcription	NH-A	brain
10	chr15:49535800-49566800	Weak transcription	Left Ventricle	heart
11	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:49537600-49566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:49539600-49563000	Weak transcription	Ovary	ovary
14	chr15:49540000-49566200	Weak transcription	K562	blood
15	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
16	chr15:49541400-49562600	Weak transcription	Dnd41	blood
17	chr15:49541600-49575000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:49541800-49558800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:49542000-49560800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:49542800-49560800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:49543200-49558000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:49543800-49564600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:49543800-49574200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:49548400-49562200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:49548800-49575800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:49549400-49575200	Weak transcription	Hela-S3	cervix
28	chr15:49550800-49559400	Weak transcription	NHLF	lung
29	chr15:49550800-49560800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:49551000-49558400	Weak transcription	Primary T cells from cord blood	blood
31	chr15:49551000-49574200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:49551000-49575400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr15:49554800-49575400	Weak transcription	Fetal Lung	lung
34	chr15:49557000-49557800	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr15:49557000-49558800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:49557200-49557800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:49557200-49557800	ZNF genes & repeats	Fetal Stomach	stomach
38	chr15:49557200-49558000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr15:49557200-49558400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr15:49557200-49558600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:49557200-49558800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr15:49557400-49557600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:49557400-49557800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:49557400-49557800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:49557400-49557800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:49557400-49557800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:49557400-49558400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr15:49557400-49558800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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