Variant report

Variant	rs10519211
Chromosome Location	chr15:49437000-49437001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49435550..49437552-chr15:49461506..49463095,2	MCF-7	breast:
2	chr15:49432624..49435848-chr15:49436150..49438690,3	K562	blood:
3	chr15:49427500..49432131-chr15:49433640..49437406,4	K562	blood:
4	chr15:49322333..49324034-chr15:49436776..49439133,2	K562	blood:
5	chr15:49432599..49435355-chr15:49436222..49438062,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000200120	Chromatin interaction
ENSG00000166200	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1055254	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1114003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16962067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16962101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16962112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16962139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16962146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962147	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16962163	0.87[ASN][1000 genomes]
rs16962166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16962189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16962235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962257	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs16962259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17396612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17426226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835227	0.81[ASN][1000 genomes]
rs2059935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2078024	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2127243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2163097	0.81[ASN][1000 genomes]
rs2169931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2279192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2289391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413934	0.87[ASN][1000 genomes]
rs3959659	0.93[ASN][1000 genomes]
rs4360865	0.87[ASN][1000 genomes]
rs57560518	0.85[ASN][1000 genomes]
rs6493354	0.93[ASN][1000 genomes]
rs7168633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7173759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7174269	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7176949	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7179094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7179393	0.87[ASN][1000 genomes]
rs7179907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7181656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182449	1.00[ASN][1000 genomes]
rs7183899	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73392233	0.85[ASN][1000 genomes]
rs73392262	0.85[ASN][1000 genomes]
rs73408130	1.00[EUR][1000 genomes]
rs8025550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8028746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8029506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8033861	0.87[ASN][1000 genomes]
rs8034427	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8035170	0.87[ASN][1000 genomes]
rs8035829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8035901	0.93[ASN][1000 genomes]
rs8039469	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8040795	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:141 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49403400-49440200	Weak transcription	Pancreas	Pancrea
2	chr15:49405600-49441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:49413600-49447000	Weak transcription	Stomach Mucosa	stomach
4	chr15:49415600-49437600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:49415800-49437400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:49416200-49437400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:49416800-49437200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:49417000-49437200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:49417200-49437200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:49417200-49437200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:49417200-49437400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:49417200-49437400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:49417400-49437200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr15:49417600-49437200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:49417600-49437200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr15:49417800-49437200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:49418600-49437600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr15:49418800-49437000	Strong transcription	Dnd41	blood
19	chr15:49419000-49437000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:49419000-49445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:49419200-49437000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:49419400-49437000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:49419600-49437000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:49420200-49447000	Weak transcription	Spleen	Spleen
25	chr15:49420400-49447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr15:49423400-49437200	Strong transcription	Fetal Intestine Large	intestine
27	chr15:49425000-49437000	Strong transcription	Primary T cells from cord blood	blood
28	chr15:49425600-49437200	Strong transcription	Primary B cells from cord blood	blood
29	chr15:49427800-49437400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:49428400-49437200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:49428400-49437400	Strong transcription	Placenta	Placenta
32	chr15:49428400-49437600	Strong transcription	GM12878-XiMat	blood
33	chr15:49428800-49437400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:49429000-49437000	Strong transcription	NHEK	skin
35	chr15:49429000-49437800	Strong transcription	Hela-S3	cervix
36	chr15:49429200-49437000	Strong transcription	HMEC	breast
37	chr15:49429200-49437600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:49429200-49447000	Weak transcription	Esophagus	oesophagus
39	chr15:49429600-49437200	Strong transcription	K562	blood
40	chr15:49430000-49437200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:49431000-49438600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:49431200-49437200	Strong transcription	HepG2	liver
43	chr15:49431400-49437600	Strong transcription	NH-A	brain
44	chr15:49431400-49437600	Strong transcription	Osteobl	bone
45	chr15:49431600-49437000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:49431600-49437400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:49432000-49437000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:49432400-49437400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:49432600-49437200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr15:49432600-49437400	Strong transcription	Primary hematopoietic stem cells	blood

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