Variant report

Variant	rs8028746
Chromosome Location	chr15:49492981-49492982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49481120..49483591-chr15:49491602..49493311,2	K562	blood:
2	chr15:49486635..49489834-chr15:49492357..49494920,3	K562	blood:
3	chr15:49486635..49490879-chr15:49492357..49495166,4	K562	blood:
4	chr15:49461934..49463873-chr15:49491426..49493979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10519211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1055254	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1114003	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962067	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16962101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16962139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16962146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16962147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16962163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16962166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962177	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs16962187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16962189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16962213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16962235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962236	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962237	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16962238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962244	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962256	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962257	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs16962259	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16962288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962308	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16962314	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16962331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16962416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17396612	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17426226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17476940	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1835227	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2059935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2078024	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2127243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2163097	0.81[ASN][1000 genomes]
rs2169931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2279192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2289391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3959659	0.94[ASN][1000 genomes]
rs57560518	0.85[ASN][1000 genomes]
rs6493354	0.94[ASN][1000 genomes]
rs7168633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7173759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7174269	1.00[EUR][1000 genomes]
rs7175494	1.00[YRI][hapmap]
rs7176949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7179094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7179907	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7181656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7182449	0.87[ASN][1000 genomes]
rs7183899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs73392233	0.85[ASN][1000 genomes]
rs73392262	0.85[ASN][1000 genomes]
rs73408130	1.00[EUR][1000 genomes]
rs8025550	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8029506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8034427	1.00[EUR][1000 genomes]
rs8035829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035901	0.94[ASN][1000 genomes]
rs8039469	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8040795	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463200-49508200	Weak transcription	Ovary	ovary
2	chr15:49463600-49494400	Weak transcription	Fetal Thymus	thymus
3	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:49463600-49527800	Weak transcription	HSMM	muscle
5	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
6	chr15:49464400-49493800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr15:49464400-49493800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:49464400-49500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:49465200-49494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
11	chr15:49467600-49494200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:49468400-49494400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:49472800-49497200	Weak transcription	Brain Anterior Caudate	brain
14	chr15:49478000-49493800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:49478000-49494400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:49478000-49496000	Weak transcription	Primary T cells from cord blood	blood
17	chr15:49478400-49497400	Weak transcription	Primary B cells from cord blood	blood
18	chr15:49480000-49510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:49480200-49494200	Weak transcription	Fetal Intestine Small	intestine
20	chr15:49480200-49494400	Weak transcription	Lung	lung
21	chr15:49480200-49500200	Weak transcription	Spleen	Spleen
22	chr15:49480200-49502000	Weak transcription	Aorta	Aorta
23	chr15:49480200-49503800	Weak transcription	Esophagus	oesophagus
24	chr15:49480600-49503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:49481600-49498600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:49482200-49494000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:49483200-49494200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr15:49483400-49493600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr15:49483600-49497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:49484000-49494000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:49484200-49519400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:49484400-49494200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:49484400-49497000	Weak transcription	Fetal Brain Male	brain
34	chr15:49485200-49494200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:49487000-49510600	Weak transcription	Thymus	Thymus
36	chr15:49487200-49494600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:49487200-49531200	Weak transcription	HMEC	breast
38	chr15:49487400-49493400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:49488600-49493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:49488600-49494000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:49488800-49494400	Weak transcription	Fetal Intestine Large	intestine
42	chr15:49488800-49496200	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:49489200-49508000	Weak transcription	Gastric	stomach
44	chr15:49489400-49496800	Weak transcription	HepG2	liver
45	chr15:49489400-49508200	Weak transcription	Pancreas	Pancrea
46	chr15:49489600-49493800	Weak transcription	Liver	Liver
47	chr15:49489800-49499000	Weak transcription	Dnd41	blood
48	chr15:49490000-49499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:49490800-49493800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:49490800-49508400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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