Variant report

Variant	rs7175494
Chromosome Location	chr15:49559382-49559383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49558189..49560695-chr15:49563264..49567318,4	K562	blood:
2	chr15:49558189..49560695-chr15:49563264..49565928,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16962146	0.90[YRI][hapmap]
rs16962177	0.82[YRI][hapmap]
rs16962187	1.00[YRI][hapmap]
rs16962237	1.00[YRI][hapmap]
rs16962276	1.00[YRI][hapmap]
rs16962308	1.00[YRI][hapmap]
rs16962327	1.00[YRI][hapmap]
rs16962331	1.00[YRI][hapmap]
rs2059935	1.00[YRI][hapmap]
rs7173759	1.00[YRI][hapmap]
rs7181656	0.90[YRI][hapmap]
rs8028746	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
2	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
3	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:49535600-49564600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:49535800-49563400	Weak transcription	NH-A	brain
9	chr15:49535800-49566800	Weak transcription	Left Ventricle	heart
10	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:49537600-49566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:49539600-49563000	Weak transcription	Ovary	ovary
13	chr15:49540000-49566200	Weak transcription	K562	blood
14	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
15	chr15:49541400-49562600	Weak transcription	Dnd41	blood
16	chr15:49541600-49575000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:49542000-49560800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:49542800-49560800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:49543800-49564600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:49543800-49574200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:49548400-49562200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:49548800-49575800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:49549400-49575200	Weak transcription	Hela-S3	cervix
25	chr15:49550800-49559400	Weak transcription	NHLF	lung
26	chr15:49550800-49560800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:49551000-49574200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:49551000-49575400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:49554800-49575400	Weak transcription	Fetal Lung	lung
30	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:49557800-49562600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:49557800-49563200	Weak transcription	Aorta	Aorta
33	chr15:49557800-49569600	Weak transcription	Fetal Intestine Small	intestine
34	chr15:49557800-49575800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:49557800-49575800	Weak transcription	Fetal Stomach	stomach
36	chr15:49557800-49607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:49558000-49562600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:49558000-49562600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:49558000-49575800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
41	chr15:49558200-49564200	Weak transcription	Liver	Liver
42	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
43	chr15:49558400-49559800	Strong transcription	Primary T cells from cord blood	blood
44	chr15:49558400-49563200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:49558400-49575800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:49558600-49560800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:49558600-49563200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:49558600-49563200	Weak transcription	HMEC	breast
49	chr15:49558600-49568400	Weak transcription	Psoas Muscle	Psoas
50	chr15:49558600-49569000	Weak transcription	Primary monocytes fromperipheralblood	blood

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