Variant report

Variant	rs2413934
Chromosome Location	chr15:49395748-49395749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10519211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1114003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16962067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16962101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16962112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16962139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16962146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16962147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16962166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962187	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs16962189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16962235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs16962259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs16962308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16962314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17396612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17426226	0.87[ASN][1000 genomes]
rs2059935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2127243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2163097	0.91[EUR][1000 genomes]
rs2169931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2279192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2289391	0.87[ASN][1000 genomes]
rs3959659	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4360865	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493354	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7168633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7173759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7174269	1.00[ASN][1000 genomes]
rs7176949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7179094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7179393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7181656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7182449	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7183899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73408130	0.90[ASN][1000 genomes]
rs8025550	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8028746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8029506	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8031610	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs8033861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034427	1.00[ASN][1000 genomes]
rs8035170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8035901	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8039469	0.81[ASN][1000 genomes]
rs8040795	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2413934	RP11-295H24.3	cis	Nerve Tibial	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:49376600-49397600	Weak transcription	NHLF	lung
3	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49381400-49397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:49381400-49402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:49381600-49398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:49382600-49402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:49385600-49403200	Weak transcription	Placenta	Placenta
9	chr15:49386400-49403400	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:49386400-49404200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:49386800-49402600	Weak transcription	Gastric	stomach
12	chr15:49387000-49397400	Weak transcription	Primary T cells from cord blood	blood
13	chr15:49387200-49397600	Weak transcription	HSMMtube	muscle
14	chr15:49387200-49397800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:49387200-49402400	Weak transcription	Spleen	Spleen
16	chr15:49387200-49403000	Weak transcription	Dnd41	blood
17	chr15:49387400-49404200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:49388800-49395800	Weak transcription	Liver	Liver
19	chr15:49388800-49396800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:49388800-49396800	Weak transcription	Fetal Intestine Large	intestine
21	chr15:49388800-49397400	Weak transcription	K562	blood
22	chr15:49388800-49402400	Weak transcription	Fetal Intestine Small	intestine
23	chr15:49388800-49402400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:49388800-49402600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:49388800-49402600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:49388800-49402600	Weak transcription	Left Ventricle	heart
27	chr15:49388800-49402600	Weak transcription	Ovary	ovary
28	chr15:49388800-49402600	Weak transcription	Pancreas	Pancrea
29	chr15:49388800-49402600	Weak transcription	Thymus	Thymus
30	chr15:49388800-49402800	Weak transcription	Lung	lung
31	chr15:49388800-49404400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:49388800-49404600	Weak transcription	Hela-S3	cervix
33	chr15:49388800-49418800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:49388800-49434800	Weak transcription	Small Intestine	intestine
35	chr15:49389600-49396000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:49389600-49404400	Weak transcription	HepG2	liver
37	chr15:49390400-49403000	Weak transcription	Aorta	Aorta
38	chr15:49390800-49403000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:49391200-49398000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:49391200-49402400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr15:49391400-49397400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:49391400-49402400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:49391400-49402600	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:49391400-49404200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:49391600-49397800	Weak transcription	NHDF-Ad	bronchial
46	chr15:49391600-49402400	Weak transcription	Esophagus	oesophagus
47	chr15:49391600-49402600	Weak transcription	Fetal Stomach	stomach
48	chr15:49391800-49397600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:49391800-49403400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:49392000-49396800	Weak transcription	Primary monocytes fromperipheralblood	blood

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