Variant report

Variant	rs57252806
Chromosome Location	chr15:49644385-49644386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49639583..49641863-chr15:49642641..49645261,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1023683	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519221	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519226	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10519227	0.82[EUR][1000 genomes]
rs1055254	0.83[EUR][1000 genomes]
rs11630318	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632211	1.00[ASN][1000 genomes]
rs11632303	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635308	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635354	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635455	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638314	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638515	0.88[EUR][1000 genomes]
rs11638606	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639423	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592277	0.84[EUR][1000 genomes]
rs12913966	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394420	1.00[ASN][1000 genomes]
rs17394970	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396119	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396747	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400427	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17400706	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17400916	1.00[ASN][1000 genomes]
rs17473148	1.00[ASN][1000 genomes]
rs17473568	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17475228	0.80[EUR][1000 genomes]
rs17476361	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476940	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17477722	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17478618	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17479003	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17479205	0.82[EUR][1000 genomes]
rs17479289	0.82[EUR][1000 genomes]
rs2078024	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28393768	1.00[ASN][1000 genomes]
rs28408092	1.00[ASN][1000 genomes]
rs28409376	1.00[ASN][1000 genomes]
rs28430272	1.00[ASN][1000 genomes]
rs28484276	1.00[ASN][1000 genomes]
rs28669217	1.00[ASN][1000 genomes]
rs3088333	1.00[ASN][1000 genomes]
rs34606419	0.81[EUR][1000 genomes]
rs35692325	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784630	0.81[EUR][1000 genomes]
rs57749497	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59112977	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59356430	0.84[EUR][1000 genomes]
rs60594237	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61259878	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61442055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162633	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168316	0.82[EUR][1000 genomes]
rs7168633	0.80[EUR][1000 genomes]
rs7177624	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390343	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390360	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390362	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390384	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390392	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392236	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392277	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73394333	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394357	0.82[EUR][1000 genomes]
rs73394359	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396206	0.84[EUR][1000 genomes]
rs73396235	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398223	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398243	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398272	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398276	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73398284	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400205	0.81[EUR][1000 genomes]
rs73408143	1.00[ASN][1000 genomes]
rs8027094	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029506	0.81[EUR][1000 genomes]
rs8030457	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033311	0.84[EUR][1000 genomes]
rs8040716	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57252806	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49623200-49646000	Weak transcription	Left Ventricle	heart
2	chr15:49623400-49647600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:49636200-49645200	Weak transcription	HUVEC	blood vessel
4	chr15:49643000-49644600	ZNF genes & repeats	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links