Variant report

Variant	rs73390360
Chromosome Location	chr15:49463462-49463463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:49461990-49464280	K562	blood:	n/a	n/a
2	EP300	chr15:49463461-49463965	GM12878	blood:	n/a	chr15:49463594-49463608
3	YY1	chr15:49463171-49463578	K562	blood:	n/a	n/a
4	MYC	chr15:49461964-49463465	K562	blood:	n/a	chr15:49462709-49462718 chr15:49462222-49462233 chr15:49462707-49462720 chr15:49462708-49462719
5	POLR2A	chr15:49461965-49463671	K562	blood:	n/a	n/a
6	POLR2A	chr15:49461944-49463814	K562	blood:	n/a	n/a
7	YY1	chr15:49463348-49463647	K562	blood:	n/a	n/a
8	POLR2A	chr15:49461978-49463706	K562	blood:	n/a	n/a
9	TAF1	chr15:49462994-49463612	K562	blood:	n/a	n/a
10	POLR2A	chr15:49463341-49463721	K562	blood:	n/a	n/a
11	UBTF	chr15:49463433-49463904	K562	blood:	n/a	n/a
12	YY1	chr15:49463333-49463569	A549	lung:	n/a	n/a
13	POLR2A	chr15:49463438-49463675	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr15:49461960-49463694	Hela-S3	cervix:	n/a	n/a
15	ZNF384	chr15:49461858-49464317	K562	blood:	n/a	n/a
16	HEY1	chr15:49463330-49463681	K562	blood:	n/a	n/a
17	POLR2A	chr15:49463407-49463794	PANC-1	pancreas:	n/a	n/a
18	UBTF	chr15:49462116-49463819	K562	blood:	n/a	n/a
19	TBP	chr15:49461865-49464281	K562	blood:	n/a	n/a
20	YY1	chr15:49463037-49463480	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr15:49462054-49463859	K562	blood:	n/a	n/a
22	POLR2A	chr15:49461897-49463789	K562	blood:	n/a	n/a
23	POLR2A	chr15:49463246-49463711	K562	blood:	n/a	n/a
24	POLR2A	chr15:49462058-49463602	NB4	blood:	n/a	n/a
25	POLR2A	chr15:49463352-49463649	K562	blood:	n/a	n/a
26	HEY1	chr15:49462023-49463842	K562	blood:	n/a	chr15:49462709-49462718

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:49462491..49464314-chr15:49469234..49471225,2	MCF-7	breast:
2	chr15:49287770..49290025-chr15:49461376..49464212,2	K562	blood:
3	chr15:49462876..49466490-chr15:49481891..49484473,3	K562	blood:
4	chr15:49446083..49452367-chr15:49460693..49464702,19	K562	blood:
5	chr15:49101548..49103539-chr15:49462914..49464640,2	K562	blood:
6	chr15:49461247..49464422-chr15:49530030..49534036,3	K562	blood:
7	chr15:49446471..49449731-chr15:49460521..49465602,13	MCF-7	breast:
8	chr15:49337641..49340367-chr15:49461061..49463741,3	MCF-7	breast:
9	chr15:49443824..49452367-chr15:49460648..49465189,20	K562	blood:

No data

Variant related genes	Relation type
MIR4716	TF binding region
ENSG00000259467	Chromatin interaction
ENSG00000156958	Chromatin interaction
ENSG00000138593	Chromatin interaction
ENSG00000259545	Chromatin interaction
ENSG00000166200	Chromatin interaction
ENSG00000103995	Chromatin interaction
ENSG00000207105	Chromatin interaction
ENSG00000259700	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10519221	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630318	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632211	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632303	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635455	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638515	0.93[EUR][1000 genomes]
rs11638606	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913966	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394420	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394970	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396119	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396747	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473148	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473568	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476361	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17477722	1.00[ASN][1000 genomes]
rs3088333	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606419	0.81[EUR][1000 genomes]
rs35692325	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775800	0.85[EUR][1000 genomes]
rs57252806	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57560518	0.81[EUR][1000 genomes]
rs57749497	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59112977	1.00[ASN][1000 genomes]
rs60594237	1.00[ASN][1000 genomes]
rs61442055	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162633	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177624	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390392	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392233	0.81[EUR][1000 genomes]
rs73392236	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392277	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.85[EUR][1000 genomes]
rs73394333	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394359	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396235	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	1.00[ASN][1000 genomes]
rs73398223	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398243	1.00[ASN][1000 genomes]
rs73408143	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025550	0.81[EUR][1000 genomes]
rs8027094	1.00[ASN][1000 genomes]
rs8030457	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73390360	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49461800-49463600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr15:49461800-49463800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr15:49461800-49464000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:49461800-49464400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:49462000-49463600	Active TSS	Muscle Satellite Cultured Cells	--
6	chr15:49462000-49463600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:49462000-49463600	Active TSS	HSMM	muscle
8	chr15:49462000-49463800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:49462000-49463800	Active TSS	Brain Cingulate Gyrus	brain
10	chr15:49462000-49464400	Active TSS	GM12878-XiMat	blood
11	chr15:49462200-49463600	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr15:49462200-49463600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr15:49462200-49463600	Active TSS	Osteobl	bone
14	chr15:49462200-49463800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:49462200-49463800	Active TSS	Duodenum Mucosa	Duodenum
16	chr15:49462200-49463800	Active TSS	NH-A	brain
17	chr15:49462200-49464000	Active TSS	A549	lung
18	chr15:49462200-49465800	Active TSS	K562	blood
19	chr15:49462400-49463600	Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr15:49462400-49463600	Active TSS	Dnd41	blood
21	chr15:49462400-49463800	Active TSS	NHDF-Ad	bronchial
22	chr15:49462400-49463800	Active TSS	NHLF	lung
23	chr15:49462800-49464400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:49463000-49463800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:49463000-49463800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr15:49463000-49464000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:49463000-49464200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:49463000-49464200	Enhancers	Spleen	Spleen
29	chr15:49463000-49466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:49463000-49479600	Weak transcription	Left Ventricle	heart
31	chr15:49463200-49463600	Enhancers	Primary B cells from cord blood	blood
32	chr15:49463200-49463600	Enhancers	Primary hematopoietic stem cells	blood
33	chr15:49463200-49463600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:49463200-49463600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr15:49463200-49463600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:49463200-49463600	Enhancers	Brain Hippocampus Middle	brain
37	chr15:49463200-49463600	Enhancers	Brain Substantia Nigra	brain
38	chr15:49463200-49463600	Weak transcription	Fetal Brain Female	brain
39	chr15:49463200-49463600	Enhancers	Fetal Muscle Leg	muscle
40	chr15:49463200-49463600	Flanking Active TSS	Placenta	Placenta
41	chr15:49463200-49463600	Enhancers	Fetal Stomach	stomach
42	chr15:49463200-49463600	Enhancers	Fetal Thymus	thymus
43	chr15:49463200-49463800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr15:49463200-49463800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:49463200-49463800	Enhancers	Fetal Brain Male	brain
46	chr15:49463200-49463800	Enhancers	Fetal Lung	lung
47	chr15:49463200-49463800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr15:49463200-49464000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr15:49463200-49464000	Enhancers	Liver	Liver
50	chr15:49463200-49464200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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