Variant report

Variant	rs61442055
Chromosome Location	chr15:49449098-49449099
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:49443824..49452367-chr15:49460648..49465189,20	K562	blood:
2	chr15:49446083..49452367-chr15:49460693..49464702,19	K562	blood:
3	chr15:49424882..49426670-chr15:49449093..49451869,2	MCF-7	breast:
4	chr15:49446471..49449731-chr15:49460521..49465602,13	MCF-7	breast:
5	chr15:49446244..49450190-chr15:50645448..50647621,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGF7-3	chr15:49448495-49450822	NR_036507

No data

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction
ENSG00000156958	Chromatin interaction
ENSG00000264210	Chromatin interaction
ENSG00000244879	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10519221	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630318	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632211	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632303	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638515	0.92[EUR][1000 genomes]
rs11638606	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913966	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394420	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394970	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396119	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396747	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473148	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476361	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17477722	1.00[ASN][1000 genomes]
rs3088333	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35692325	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775800	0.85[EUR][1000 genomes]
rs57252806	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57560518	0.80[EUR][1000 genomes]
rs57749497	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59112977	1.00[ASN][1000 genomes]
rs60594237	1.00[ASN][1000 genomes]
rs7162633	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177624	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390343	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390360	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390362	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390384	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390392	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392233	0.80[EUR][1000 genomes]
rs73392236	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392277	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.84[EUR][1000 genomes]
rs73394333	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394359	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396235	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	1.00[ASN][1000 genomes]
rs73398223	1.00[ASN][1000 genomes]
rs73398243	1.00[ASN][1000 genomes]
rs73408143	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025550	0.80[EUR][1000 genomes]
rs8027094	1.00[ASN][1000 genomes]
rs8030457	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974572	chr15:49448277-49450621	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61442055	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49445600-49449200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr15:49445800-49449200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:49445800-49449200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr15:49445800-49450400	Active TSS	NHLF	lung
5	chr15:49446000-49449400	Active TSS	K562	blood
6	chr15:49446000-49449600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:49446000-49450000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:49446200-49449200	Active TSS	A549	lung
9	chr15:49446200-49449600	Active TSS	NHDF-Ad	bronchial
10	chr15:49446400-49449200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:49446400-49449200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:49446400-49449600	Active TSS	HMEC	breast
13	chr15:49446400-49450400	Active TSS	GM12878-XiMat	blood
14	chr15:49446600-49449200	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr15:49446600-49449200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:49446600-49449200	Active TSS	Fetal Thymus	thymus
17	chr15:49446600-49449400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:49446600-49449600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:49446600-49450000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:49446800-49449400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:49446800-49449400	Active TSS	Fetal Intestine Large	intestine
22	chr15:49446800-49449600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:49448200-49449400	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr15:49448400-49449400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:49448400-49449800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:49448400-49450000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:49448600-49449200	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr15:49448600-49449200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr15:49448600-49449400	Flanking Active TSS	Liver	Liver
30	chr15:49448600-49449400	Active TSS	HepG2	liver
31	chr15:49448600-49449400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr15:49448800-49449200	Flanking Active TSS	Hela-S3	cervix
33	chr15:49448800-49449400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr15:49448800-49449400	Flanking Active TSS	HUVEC	blood vessel
35	chr15:49448800-49449600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr15:49448800-49449600	Enhancers	Fetal Heart	heart
37	chr15:49448800-49450000	Flanking Active TSS	Dnd41	blood
38	chr15:49448800-49450200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:49448800-49450200	Enhancers	Colon Smooth Muscle	Colon
40	chr15:49448800-49450400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:49448800-49450400	Active TSS	Duodenum Mucosa	Duodenum
42	chr15:49448800-49456200	Weak transcription	Gastric	stomach
43	chr15:49448800-49461400	Weak transcription	Small Intestine	intestine
44	chr15:49448800-49461800	Weak transcription	Colonic Mucosa	Colon
45	chr15:49448800-49461800	Weak transcription	Stomach Mucosa	stomach
46	chr15:49448800-49462000	Weak transcription	Placenta	Placenta
47	chr15:49448800-49462000	Weak transcription	Left Ventricle	heart
48	chr15:49448800-49462000	Weak transcription	Lung	lung
49	chr15:49448800-49462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:49448800-49462200	Weak transcription	Ovary	ovary

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