Variant report

Variant	rs17394970
Chromosome Location	chr15:49437568-49437569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49410175..49412342-chr15:49437300..49438886,2	K562	blood:
2	chr15:49432624..49435848-chr15:49436150..49438690,3	K562	blood:
3	chr15:49322333..49324034-chr15:49436776..49439133,2	K562	blood:
4	chr15:49432599..49435355-chr15:49436222..49438062,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10519221	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630318	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.88[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632211	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632303	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.93[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635455	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638515	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11638606	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913966	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394420	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396119	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396612	0.82[CEU][hapmap]
rs17396747	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473148	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473568	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476361	0.94[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088333	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35692325	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775800	0.85[EUR][1000 genomes]
rs57252806	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57560518	0.80[EUR][1000 genomes]
rs57749497	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59112977	1.00[ASN][1000 genomes]
rs60594237	1.00[ASN][1000 genomes]
rs61442055	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162633	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177624	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390343	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390360	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390362	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390384	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390392	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392233	0.80[EUR][1000 genomes]
rs73392236	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392277	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.84[EUR][1000 genomes]
rs73394333	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394359	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396235	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	1.00[ASN][1000 genomes]
rs73398223	1.00[ASN][1000 genomes]
rs73408143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025550	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs8029506	0.83[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17394970	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49403400-49440200	Weak transcription	Pancreas	Pancrea
2	chr15:49405600-49441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:49413600-49447000	Weak transcription	Stomach Mucosa	stomach
4	chr15:49415600-49437600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:49418600-49437600	Strong transcription	Primary B cells from peripheral blood	blood
6	chr15:49419000-49445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:49420200-49447000	Weak transcription	Spleen	Spleen
8	chr15:49420400-49447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:49428400-49437600	Strong transcription	GM12878-XiMat	blood
10	chr15:49429000-49437800	Strong transcription	Hela-S3	cervix
11	chr15:49429200-49437600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:49429200-49447000	Weak transcription	Esophagus	oesophagus
13	chr15:49431000-49438600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:49431400-49437600	Strong transcription	NH-A	brain
15	chr15:49431400-49437600	Strong transcription	Osteobl	bone
16	chr15:49433800-49446600	Weak transcription	Fetal Intestine Small	intestine
17	chr15:49434800-49438800	Weak transcription	Psoas Muscle	Psoas
18	chr15:49435200-49445800	Weak transcription	Fetal Heart	heart
19	chr15:49435600-49446600	Weak transcription	Right Ventricle	heart
20	chr15:49435800-49437800	Weak transcription	NHDF-Ad	bronchial
21	chr15:49435800-49438200	Weak transcription	A549	lung
22	chr15:49435800-49438200	Weak transcription	HSMM	muscle
23	chr15:49435800-49438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:49435800-49438400	Weak transcription	Brain Substantia Nigra	brain
25	chr15:49435800-49438400	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:49435800-49438600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:49435800-49438600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:49435800-49438600	Weak transcription	Small Intestine	intestine
29	chr15:49435800-49440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:49435800-49440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:49435800-49440400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:49435800-49440600	Weak transcription	Brain Anterior Caudate	brain
33	chr15:49435800-49440600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:49435800-49440800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:49435800-49442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:49435800-49442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:49435800-49443000	Weak transcription	Colonic Mucosa	Colon
38	chr15:49435800-49443000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:49435800-49445400	Weak transcription	Brain Germinal Matrix	brain
40	chr15:49435800-49445600	Weak transcription	Fetal Brain Male	brain
41	chr15:49435800-49445600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:49435800-49446000	Weak transcription	Fetal Kidney	kidney
43	chr15:49435800-49446000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:49435800-49446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:49435800-49446600	Weak transcription	HSMMtube	muscle
46	chr15:49435800-49446800	Weak transcription	Aorta	Aorta
47	chr15:49435800-49446800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:49436000-49438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:49436000-49438400	Weak transcription	Brain Hippocampus Middle	brain
50	chr15:49436000-49438600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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