Variant report

Variant	rs7177624
Chromosome Location	chr15:49481712-49481713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49467463..49469165-chr15:49481019..49482745,2	K562	blood:
2	chr15:49481120..49483591-chr15:49491602..49493311,2	K562	blood:
3	chr15:49463826..49467662-chr15:49477786..49482554,6	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1023683	1.00[ASN][1000 genomes]
rs10519221	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630318	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632211	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632303	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635308	1.00[ASN][1000 genomes]
rs11635354	1.00[ASN][1000 genomes]
rs11635455	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638314	1.00[ASN][1000 genomes]
rs11638515	0.94[EUR][1000 genomes]
rs11638606	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639423	1.00[ASN][1000 genomes]
rs12913966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394420	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394970	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396119	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396747	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473148	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473568	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476361	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17477722	1.00[ASN][1000 genomes]
rs3088333	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606419	0.82[EUR][1000 genomes]
rs35692325	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775800	0.84[EUR][1000 genomes]
rs57252806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57560518	0.82[EUR][1000 genomes]
rs57749497	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59112977	1.00[ASN][1000 genomes]
rs60594237	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61259878	1.00[ASN][1000 genomes]
rs61442055	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162633	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390343	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390360	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390362	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390384	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390392	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392233	0.82[EUR][1000 genomes]
rs73392236	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392262	0.81[EUR][1000 genomes]
rs73392277	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.86[EUR][1000 genomes]
rs73394333	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394359	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396235	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	1.00[ASN][1000 genomes]
rs73398223	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398243	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398272	1.00[ASN][1000 genomes]
rs73398284	1.00[ASN][1000 genomes]
rs73408143	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025550	0.82[EUR][1000 genomes]
rs8027094	1.00[ASN][1000 genomes]
rs8030457	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7177624	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463200-49508200	Weak transcription	Ovary	ovary
2	chr15:49463600-49494400	Weak transcription	Fetal Thymus	thymus
3	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:49463600-49527800	Weak transcription	HSMM	muscle
5	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
6	chr15:49464000-49482800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:49464000-49491600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:49464200-49481800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:49464400-49493800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:49464400-49493800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:49464400-49500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:49464800-49481800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:49465200-49494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
15	chr15:49466800-49482800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:49467600-49494200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:49468400-49494400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:49472800-49497200	Weak transcription	Brain Anterior Caudate	brain
19	chr15:49473000-49483400	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:49473600-49483200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:49474800-49490200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:49476800-49483400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:49478000-49482800	Weak transcription	GM12878-XiMat	blood
24	chr15:49478000-49493800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:49478000-49494400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:49478000-49496000	Weak transcription	Primary T cells from cord blood	blood
27	chr15:49478400-49482800	Weak transcription	Adipose Nuclei	Adipose
28	chr15:49478400-49497400	Weak transcription	Primary B cells from cord blood	blood
29	chr15:49478600-49481800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:49480000-49483800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr15:49480000-49510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:49480200-49494200	Weak transcription	Fetal Intestine Small	intestine
33	chr15:49480200-49494400	Weak transcription	Lung	lung
34	chr15:49480200-49500200	Weak transcription	Spleen	Spleen
35	chr15:49480200-49502000	Weak transcription	Aorta	Aorta
36	chr15:49480200-49503800	Weak transcription	Esophagus	oesophagus
37	chr15:49480400-49491200	Weak transcription	NHDF-Ad	bronchial
38	chr15:49480600-49481800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:49480600-49491000	Weak transcription	Left Ventricle	heart
40	chr15:49480600-49491200	Weak transcription	NHLF	lung
41	chr15:49480600-49491400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:49480600-49491600	Weak transcription	Osteobl	bone
43	chr15:49480600-49503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:49480800-49491000	Weak transcription	Psoas Muscle	Psoas
45	chr15:49480800-49491200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:49481400-49482400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:49481400-49483200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:49481600-49482400	Enhancers	K562	blood
49	chr15:49481600-49483200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:49481600-49498600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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