Variant report

Variant	rs73398272
Chromosome Location	chr15:49708623-49708624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1023683	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519221	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519226	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519227	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1055254	0.82[EUR][1000 genomes]
rs11630318	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632303	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635308	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635354	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	1.00[ASN][1000 genomes]
rs11638314	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638515	0.84[EUR][1000 genomes]
rs11638606	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639423	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592277	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12913966	1.00[ASN][1000 genomes]
rs17396119	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396747	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400427	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400706	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17400916	1.00[ASN][1000 genomes]
rs17476361	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476940	0.82[EUR][1000 genomes]
rs17477722	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17477923	0.83[AFR][1000 genomes]
rs17478618	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17479003	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17479205	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17479289	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2078024	0.82[EUR][1000 genomes]
rs28393768	1.00[ASN][1000 genomes]
rs28408092	1.00[ASN][1000 genomes]
rs28409376	1.00[ASN][1000 genomes]
rs28430272	1.00[ASN][1000 genomes]
rs28484276	1.00[ASN][1000 genomes]
rs28669217	1.00[ASN][1000 genomes]
rs35692325	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784630	0.80[EUR][1000 genomes]
rs57252806	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57749497	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	1.00[ASN][1000 genomes]
rs59112977	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59356430	0.82[EUR][1000 genomes]
rs60594237	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61259878	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162633	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168316	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7177624	1.00[ASN][1000 genomes]
rs73390362	1.00[ASN][1000 genomes]
rs73390384	1.00[ASN][1000 genomes]
rs73390392	1.00[ASN][1000 genomes]
rs73392236	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392277	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.92[EUR][1000 genomes]
rs73394333	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394357	0.81[EUR][1000 genomes]
rs73394359	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396206	0.82[EUR][1000 genomes]
rs73396235	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398223	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398243	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398264	0.88[AFR][1000 genomes]
rs73398276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73398284	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400205	0.85[EUR][1000 genomes]
rs8027094	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030457	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033311	0.82[EUR][1000 genomes]
rs8040716	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73398272	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49703000-49709600	Weak transcription	Fetal Lung	lung
2	chr15:49707200-49709000	Enhancers	Hela-S3	cervix
3	chr15:49707400-49708800	Enhancers	NHLF	lung
4	chr15:49707600-49709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:49708000-49708800	Enhancers	Fetal Stomach	stomach
6	chr15:49708200-49713400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:49708200-49713800	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:49708400-49708800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:49708400-49713800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:49708400-49714400	Weak transcription	HUVEC	blood vessel
11	chr15:49708600-49711200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:49708600-49714000	Weak transcription	Osteobl	bone

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