Variant report

Variant	rs73398264
Chromosome Location	chr15:49706417-49706418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1023683	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10519226	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10519227	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635308	0.83[AFR][1000 genomes]
rs11639423	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12591799	0.90[ASN][1000 genomes]
rs12592177	0.90[ASN][1000 genomes]
rs12592277	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592296	0.90[ASN][1000 genomes]
rs12594154	0.90[ASN][1000 genomes]
rs12594827	0.90[ASN][1000 genomes]
rs12595497	0.82[ASN][1000 genomes]
rs12595701	0.82[ASN][1000 genomes]
rs17400427	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17400706	0.81[AFR][1000 genomes]
rs17400916	0.80[EUR][1000 genomes]
rs17477923	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17478618	0.81[AFR][1000 genomes]
rs17479205	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17479289	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34635038	0.82[ASN][1000 genomes]
rs3809495	0.82[ASN][1000 genomes]
rs4338740	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61259878	0.83[AFR][1000 genomes]
rs7168316	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73398272	0.88[AFR][1000 genomes]
rs73398284	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73400205	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73398264	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49703000-49709600	Weak transcription	Fetal Lung	lung
2	chr15:49703400-49707400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:49703600-49707200	Weak transcription	NHDF-Ad	bronchial
4	chr15:49705800-49707400	Enhancers	Primary neutrophils fromperipheralblood	blood

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