Variant report

Variant	rs34606419
Chromosome Location	chr15:49532587-49532588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49461247..49464422-chr15:49530030..49534036,3	K562	blood:
2	chr15:49527986..49530632-chr15:49532231..49535128,2	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000264210	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10519221	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11630318	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11632038	0.83[EUR][1000 genomes]
rs11632303	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11633282	0.81[EUR][1000 genomes]
rs11634636	0.84[EUR][1000 genomes]
rs11635005	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11635814	0.82[EUR][1000 genomes]
rs11638515	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11638606	0.81[EUR][1000 genomes]
rs12913966	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17396119	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17396536	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17396747	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17397211	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17476361	0.84[EUR][1000 genomes]
rs35692325	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57252806	0.81[EUR][1000 genomes]
rs57749497	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57785991	0.82[EUR][1000 genomes]
rs7162633	0.81[EUR][1000 genomes]
rs7165168	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7167474	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7177624	0.82[EUR][1000 genomes]
rs73390343	0.81[EUR][1000 genomes]
rs73390360	0.81[EUR][1000 genomes]
rs73390362	0.81[EUR][1000 genomes]
rs73390384	0.81[EUR][1000 genomes]
rs73390392	0.82[EUR][1000 genomes]
rs73392236	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73392249	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73392256	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73392277	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73392288	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73394324	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73394331	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73394333	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73394339	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73394355	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73394359	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73396235	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569340	chr15:49529302-49547735	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv569341	chr15:49529302-49547790	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv569342	chr15:49529302-49549943	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv569343	chr15:49531192-49547790	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34606419	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
2	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
3	chr15:49508800-49535800	Weak transcription	A549	lung
4	chr15:49510000-49541800	Weak transcription	NHEK	skin
5	chr15:49510200-49537000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:49510800-49534400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:49518000-49535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:49518000-49541000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:49518200-49548600	Weak transcription	Aorta	Aorta
10	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
11	chr15:49518800-49539200	Weak transcription	Ovary	ovary
12	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
13	chr15:49522000-49534600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:49522000-49537800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:49522000-49538200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:49522000-49540400	Weak transcription	Stomach Mucosa	stomach
17	chr15:49522200-49535000	Weak transcription	Left Ventricle	heart
18	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
19	chr15:49522600-49534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:49522600-49535200	Weak transcription	Gastric	stomach
21	chr15:49523800-49534800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:49523800-49540200	Weak transcription	Spleen	Spleen
23	chr15:49524600-49535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:49524600-49535200	Weak transcription	Placenta	Placenta
25	chr15:49524600-49535200	Weak transcription	Thymus	Thymus
26	chr15:49524600-49539200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:49524600-49544800	Weak transcription	Lung	lung
28	chr15:49525000-49534600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:49525200-49535000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:49525200-49535000	Weak transcription	Fetal Intestine Large	intestine
31	chr15:49525400-49535200	Weak transcription	Fetal Intestine Small	intestine
32	chr15:49526200-49534600	Weak transcription	K562	blood
33	chr15:49527600-49532800	Enhancers	Fetal Lung	lung
34	chr15:49527600-49533600	Enhancers	Fetal Stomach	stomach
35	chr15:49528000-49535400	Weak transcription	GM12878-XiMat	blood
36	chr15:49528000-49537200	Weak transcription	Brain Substantia Nigra	brain
37	chr15:49528000-49539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:49528200-49534400	Weak transcription	HSMM	muscle
40	chr15:49528400-49534600	Weak transcription	NH-A	brain
41	chr15:49528400-49547800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:49528600-49535000	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:49529000-49537000	Weak transcription	Brain Germinal Matrix	brain
44	chr15:49529200-49550600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:49529400-49535200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:49529400-49539800	Weak transcription	Brain Hippocampus Middle	brain
47	chr15:49529400-49540200	Weak transcription	Fetal Brain Female	brain
48	chr15:49529400-49544200	Weak transcription	Brain Anterior Caudate	brain
49	chr15:49529400-49545600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:49529600-49541600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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