Variant report

Variant	rs11635455
Chromosome Location	chr15:49439413-49439414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49429242..49431810-chr15:49437695..49440967,3	K562	blood:
2	chr15:49337063..49339698-chr15:49438112..49439651,2	MCF-7	breast:
3	chr15:49438116..49443617-chr15:49443933..49448726,7	K562	blood:
4	chr15:49411597..49414274-chr15:49439381..49441889,2	K562	blood:
5	chr15:49336910..49339486-chr15:49439090..49441329,2	MCF-7	breast:
6	chr15:49438066..49440274-chr15:49455575..49457158,2	K562	blood:

Variant related genes	Relation type
ENSG00000259467	Chromatin interaction
ENSG00000166200	Chromatin interaction
ENSG00000156958	Chromatin interaction
ENSG00000200120	Chromatin interaction
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10519221	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630318	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632038	0.88[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632211	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632303	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632575	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633282	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634636	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635005	0.93[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635814	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638515	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11638606	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913966	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394420	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394970	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396119	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396536	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396612	0.81[CEU][hapmap]
rs17396747	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397211	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473148	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473568	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17476361	0.94[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088333	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35692325	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775800	0.85[EUR][1000 genomes]
rs57252806	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57560518	0.80[EUR][1000 genomes]
rs57749497	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57785991	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59112977	1.00[ASN][1000 genomes]
rs60594237	1.00[ASN][1000 genomes]
rs61442055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162633	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165168	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167474	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177624	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390343	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390360	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390362	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390384	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73390392	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392233	0.80[EUR][1000 genomes]
rs73392236	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392249	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392256	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392277	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392288	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394324	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394331	0.84[EUR][1000 genomes]
rs73394333	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394339	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394355	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394359	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396235	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396238	1.00[ASN][1000 genomes]
rs73398223	1.00[ASN][1000 genomes]
rs73408143	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025550	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs8029506	0.83[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11635455	FGF7	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49403400-49440200	Weak transcription	Pancreas	Pancrea
2	chr15:49405600-49441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:49413600-49447000	Weak transcription	Stomach Mucosa	stomach
4	chr15:49419000-49445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:49420200-49447000	Weak transcription	Spleen	Spleen
6	chr15:49420400-49447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:49429200-49447000	Weak transcription	Esophagus	oesophagus
8	chr15:49433800-49446600	Weak transcription	Fetal Intestine Small	intestine
9	chr15:49435200-49445800	Weak transcription	Fetal Heart	heart
10	chr15:49435600-49446600	Weak transcription	Right Ventricle	heart
11	chr15:49435800-49440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:49435800-49440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:49435800-49440400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:49435800-49440600	Weak transcription	Brain Anterior Caudate	brain
15	chr15:49435800-49440600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:49435800-49440800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:49435800-49442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:49435800-49442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:49435800-49443000	Weak transcription	Colonic Mucosa	Colon
20	chr15:49435800-49443000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:49435800-49445400	Weak transcription	Brain Germinal Matrix	brain
22	chr15:49435800-49445600	Weak transcription	Fetal Brain Male	brain
23	chr15:49435800-49445600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr15:49435800-49446000	Weak transcription	Fetal Kidney	kidney
25	chr15:49435800-49446000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:49435800-49446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:49435800-49446600	Weak transcription	HSMMtube	muscle
28	chr15:49435800-49446800	Weak transcription	Aorta	Aorta
29	chr15:49435800-49446800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:49436000-49439600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:49436000-49439600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:49436000-49440000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:49436000-49440400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:49436000-49440600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:49436000-49444800	Weak transcription	Lung	lung
36	chr15:49436000-49445200	Weak transcription	Thymus	Thymus
37	chr15:49436000-49446000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:49436000-49446600	Weak transcription	Fetal Stomach	stomach
39	chr15:49436000-49446600	Weak transcription	Fetal Thymus	thymus
40	chr15:49436000-49446800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr15:49436000-49446800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:49436000-49447000	Weak transcription	Gastric	stomach
43	chr15:49436000-49447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:49436200-49446600	Weak transcription	Fetal Lung	lung
45	chr15:49436200-49446600	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:49436200-49447000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:49436400-49441600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:49436400-49447000	Weak transcription	Left Ventricle	heart
49	chr15:49437000-49440200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:49437000-49441600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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