Variant report

Variant	rs10519735
Chromosome Location	chr4:173967546-173967547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58664527	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7684996	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173959600-173968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:173961800-173972800	Weak transcription	Aorta	Aorta
3	chr4:173962000-173970000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:173962000-173972200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:173963200-173967600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:173965600-173967800	Weak transcription	HSMMtube	muscle
7	chr4:173967000-173967600	Enhancers	Fetal Muscle Trunk	muscle
8	chr4:173967200-173968800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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