Variant report

Variant	rs10519789
Chromosome Location	chr15:33386299-33386300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519790	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632374	1.00[ASN][1000 genomes]
rs11638642	1.00[ASN][1000 genomes]
rs12148844	1.00[ASN][1000 genomes]
rs12900344	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901863	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904866	1.00[ASN][1000 genomes]
rs12910785	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917013	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235589	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345778	1.00[ASN][1000 genomes]
rs345796	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345797	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943452	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62000008	1.00[ASN][1000 genomes]
rs67629086	1.00[ASN][1000 genomes]
rs8039567	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783724	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33380600-33387200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:33381400-33386800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:33381400-33387200	Enhancers	Osteobl	bone
4	chr15:33381800-33387200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:33383000-33389800	Weak transcription	Hela-S3	cervix
6	chr15:33383000-33390000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:33383200-33388400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:33383200-33390400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:33384200-33387000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:33384200-33387200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:33384200-33387200	Enhancers	HSMMtube	muscle
12	chr15:33384200-33387200	Enhancers	NHDF-Ad	bronchial
13	chr15:33384400-33386800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:33384400-33387200	Enhancers	HSMM	muscle
15	chr15:33384800-33386400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:33384800-33386600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:33384800-33387200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr15:33384800-33387200	Enhancers	NHLF	lung
19	chr15:33384800-33389600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:33384800-33390000	Weak transcription	HUVEC	blood vessel
21	chr15:33384800-33390400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:33384800-33391200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:33384800-33395000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:33384800-33395400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:33385000-33387200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:33385000-33387400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:33385000-33389800	Weak transcription	NHEK	skin
28	chr15:33385000-33396400	Weak transcription	Fetal Kidney	kidney
29	chr15:33385200-33386400	Weak transcription	Fetal Lung	lung
30	chr15:33385200-33387400	Enhancers	NH-A	brain
31	chr15:33385200-33390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:33385600-33386600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:33385600-33389800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:33385800-33386400	Enhancers	Fetal Muscle Leg	muscle
35	chr15:33385800-33386600	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr15:33386000-33387000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:33386200-33386800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:33386200-33387000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr15:33386200-33387200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr15:33386200-33387200	Enhancers	Fetal Heart	heart

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