Variant report

Variant	rs11632374
Chromosome Location	chr15:33478617-33478618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10519789	1.00[ASN][1000 genomes]
rs10519790	1.00[ASN][1000 genomes]
rs11632332	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11638642	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148844	1.00[ASN][1000 genomes]
rs12900344	1.00[ASN][1000 genomes]
rs12901863	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12910785	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12917013	1.00[ASN][1000 genomes]
rs12917561	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17235589	1.00[ASN][1000 genomes]
rs17235975	1.00[CHB][hapmap]
rs345778	1.00[ASN][1000 genomes]
rs345796	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs345797	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs345803	1.00[ASN][1000 genomes]
rs34943452	1.00[ASN][1000 genomes]
rs62000008	1.00[ASN][1000 genomes]
rs67629086	1.00[ASN][1000 genomes]
rs8039567	1.00[ASN][1000 genomes]
rs9783724	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33473200-33485600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:33476200-33479200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:33478200-33479600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr15:33478200-33480600	Enhancers	GM12878-XiMat	blood
5	chr15:33478200-33482200	Enhancers	Primary B cells from peripheral blood	blood
6	chr15:33478600-33479800	Weak transcription	Fetal Thymus	thymus

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