Variant report

Variant	rs10519796
Chromosome Location	chr15:33419779-33419780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33359725..33362566-chr15:33418039..33421001,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519794	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16965359	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16965420	0.82[AFR][1000 genomes]
rs3850097	0.93[YRI][hapmap]
rs3861200	0.93[YRI][hapmap]
rs59633863	1.00[AFR][1000 genomes]
rs60132240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74008221	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33411800-33420200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:33416600-33420400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:33417400-33420200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr15:33418000-33420200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:33418200-33419800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:33418200-33419800	Enhancers	HMEC	breast
7	chr15:33418200-33420000	Enhancers	Fetal Muscle Leg	muscle
8	chr15:33418200-33420200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:33418200-33420600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:33418600-33419800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr15:33418600-33420200	Enhancers	Hela-S3	cervix
12	chr15:33418800-33421000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:33419000-33420000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:33419000-33422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:33419000-33423800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:33419000-33423800	Weak transcription	Brain Angular Gyrus	brain
17	chr15:33419200-33419800	Enhancers	Dnd41	blood
18	chr15:33419200-33420000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:33419200-33420000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:33419200-33420000	Enhancers	Adipose Nuclei	Adipose
21	chr15:33419200-33420000	Enhancers	Colon Smooth Muscle	Colon
22	chr15:33419200-33420000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:33419200-33420200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr15:33419200-33420200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:33419200-33420200	Enhancers	Thymus	Thymus
26	chr15:33419200-33420600	Enhancers	Fetal Thymus	thymus
27	chr15:33419200-33424200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:33419200-33427600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:33419200-33427600	Weak transcription	Lung	lung
30	chr15:33419200-33428600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:33419200-33430000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:33419200-33430400	Weak transcription	Psoas Muscle	Psoas
33	chr15:33419400-33419800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:33419400-33419800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:33419400-33420000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:33419400-33420000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr15:33419400-33420000	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr15:33419400-33420000	Enhancers	Osteobl	bone
39	chr15:33419400-33420200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:33419400-33420200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:33419400-33420200	Enhancers	HSMM	muscle
42	chr15:33419400-33420400	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr15:33419400-33420400	Enhancers	NHDF-Ad	bronchial
44	chr15:33419400-33423600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:33419400-33423600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr15:33419400-33423800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:33419600-33419800	Enhancers	Fetal Kidney	kidney
48	chr15:33419600-33420200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:33419600-33420400	Enhancers	NHLF	lung
50	chr15:33419600-33423600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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