Variant report

Variant	rs16965420
Chromosome Location	chr15:33424681-33424682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:32953917..32954645-chr15:33424445..33425144,2	K562	blood:
2	chr15:33358789..33361787-chr15:33421659..33424986,4	MCF-7	breast:
3	chr15:33314155..33314778-chr15:33424470..33425220,3	K562	blood:
4	chr15:33378091..33379388-chr15:33424633..33425509,8	MCF-7	breast:
5	chr15:33299011..33299669-chr15:33424327..33425140,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10519794	0.82[AFR][1000 genomes]
rs10519796	0.82[AFR][1000 genomes]
rs16965359	0.82[AFR][1000 genomes]
rs59633863	0.82[AFR][1000 genomes]
rs60132240	0.82[AFR][1000 genomes]
rs74008221	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33419200-33427600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:33419200-33427600	Weak transcription	Lung	lung
3	chr15:33419200-33428600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:33419200-33430000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:33419200-33430400	Weak transcription	Psoas Muscle	Psoas
6	chr15:33420000-33425200	Weak transcription	Adipose Nuclei	Adipose
7	chr15:33420000-33425200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:33420000-33427200	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:33420400-33426200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:33420600-33434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:33423200-33425400	Enhancers	Fetal Thymus	thymus
12	chr15:33423600-33425000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr15:33423600-33425000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:33423600-33425200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr15:33423600-33425200	Enhancers	Thymus	Thymus
16	chr15:33423600-33425400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:33423600-33425400	Enhancers	Hela-S3	cervix
18	chr15:33423600-33425400	Enhancers	NHEK	skin
19	chr15:33423600-33425600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:33423600-33425600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:33423600-33425600	Enhancers	HSMM	muscle
22	chr15:33423600-33425600	Enhancers	NHLF	lung
23	chr15:33423600-33428400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:33423600-33428800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:33423800-33424800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:33423800-33424800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:33423800-33425000	Enhancers	HUVEC	blood vessel
28	chr15:33423800-33425000	Enhancers	NH-A	brain
29	chr15:33423800-33425400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:33423800-33425400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:33423800-33425400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:33423800-33425400	Enhancers	Fetal Kidney	kidney
33	chr15:33423800-33425400	Enhancers	NHDF-Ad	bronchial
34	chr15:33423800-33425600	Enhancers	Fetal Muscle Leg	muscle
35	chr15:33423800-33425600	Enhancers	HSMMtube	muscle
36	chr15:33423800-33425600	Enhancers	Osteobl	bone
37	chr15:33424000-33424800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:33424000-33424800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr15:33424000-33425000	Enhancers	Fetal Stomach	stomach
40	chr15:33424000-33425200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:33424000-33425400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:33424200-33425000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:33424400-33424800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr15:33424400-33424800	Flanking Active TSS	HMEC	breast
45	chr15:33424400-33425000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:33424400-33425200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:33424400-33425200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:33424400-33430000	Weak transcription	Fetal Lung	lung
49	chr15:33424400-33440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:33424600-33425000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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