Variant report

Variant	rs10519948
Chromosome Location	chr4:149152029-149152030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17007968	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17024397	1.00[MEX][hapmap]
rs3910055	1.00[MEX][hapmap]
rs6844150	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149138400-149157800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:149138600-149157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:149139000-149157200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149140000-149170800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:149146400-149157200	Weak transcription	Gastric	stomach
6	chr4:149146400-149157200	Weak transcription	Stomach Mucosa	stomach
7	chr4:149147000-149152200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:149150400-149153400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:149150600-149160000	Weak transcription	Left Ventricle	heart
10	chr4:149150800-149160400	Weak transcription	Lung	lung
11	chr4:149151000-149157200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:149151600-149157000	Weak transcription	Pancreas	Pancrea
13	chr4:149152000-149157200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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