Variant report

Variant	rs17024397
Chromosome Location	chr4:149039656-149039657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10010996	1.00[EUR][1000 genomes]
rs10213616	1.00[EUR][1000 genomes]
rs10519932	1.00[EUR][1000 genomes]
rs10519948	1.00[MEX][hapmap]
rs1436492	1.00[EUR][1000 genomes]
rs17024163	1.00[EUR][1000 genomes]
rs17024360	1.00[TSI][hapmap]
rs28371967	1.00[EUR][1000 genomes]
rs28647457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3910055	1.00[MEX][hapmap]
rs41435251	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs5536	1.00[TSI][hapmap]
rs58511825	1.00[AMR][1000 genomes]
rs58776118	1.00[EUR][1000 genomes]
rs6813344	1.00[EUR][1000 genomes]
rs6815620	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6844150	1.00[MEX][hapmap]
rs73853711	1.00[EUR][1000 genomes]
rs7683313	1.00[TSI][hapmap]

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
5	chr4:149024000-149041000	Weak transcription	Fetal Kidney	kidney
6	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
7	chr4:149024600-149040200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:149026200-149042000	Weak transcription	Fetal Heart	heart
9	chr4:149026200-149044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:149028400-149044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:149031200-149044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:149031600-149043400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:149035000-149043600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr4:149035200-149042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:149035400-149040000	Weak transcription	Spleen	Spleen
18	chr4:149035400-149044200	Weak transcription	Brain Substantia Nigra	brain
19	chr4:149035400-149045800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
21	chr4:149035600-149039800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:149035600-149040000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:149037600-149040400	Enhancers	Fetal Muscle Leg	muscle
24	chr4:149037800-149039800	Weak transcription	Adipose Nuclei	Adipose
25	chr4:149037800-149042600	Weak transcription	NHLF	lung
26	chr4:149038000-149040000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:149038000-149041200	Weak transcription	NHDF-Ad	bronchial
28	chr4:149038000-149044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:149038200-149041600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:149038200-149043200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:149038400-149040400	Weak transcription	Ovary	ovary
32	chr4:149038400-149040600	Strong transcription	Aorta	Aorta
33	chr4:149038400-149041600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr4:149038400-149041600	Strong transcription	Fetal Intestine Large	intestine
35	chr4:149038400-149041600	Strong transcription	Fetal Stomach	stomach
36	chr4:149038400-149041600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr4:149038400-149041800	Strong transcription	Lung	lung
38	chr4:149038400-149042000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr4:149038600-149040000	Weak transcription	Left Ventricle	heart
40	chr4:149038600-149041200	Strong transcription	Colon Smooth Muscle	Colon
41	chr4:149038800-149040200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr4:149038800-149041600	Strong transcription	Liver	Liver
43	chr4:149039000-149040600	Strong transcription	Gastric	stomach
44	chr4:149039000-149041400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr4:149039000-149041600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr4:149039000-149041600	Strong transcription	Pancreas	Pancrea
47	chr4:149039000-149041800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:149039200-149040200	Enhancers	HSMMtube	muscle
49	chr4:149039200-149041600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr4:149039200-149041600	Strong transcription	Brain Anterior Caudate	brain

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