Variant report

Variant	rs10519932
Chromosome Location	chr4:148983478-148983479
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr4:148981703-148983567	HEK293	kidney:	n/a	n/a
2	ESR1	chr4:148983065-148983800	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ARHGAP10	TF binding region

rs_ID	r²[population]
rs10010996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213616	1.00[EUR][1000 genomes]
rs1436492	1.00[EUR][1000 genomes]
rs17024108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024163	1.00[EUR][1000 genomes]
rs17024397	1.00[EUR][1000 genomes]
rs28371967	1.00[EUR][1000 genomes]
rs28647457	1.00[EUR][1000 genomes]
rs41435251	1.00[EUR][1000 genomes]
rs56742479	1.00[EUR][1000 genomes]
rs58776118	1.00[EUR][1000 genomes]
rs59129054	1.00[EUR][1000 genomes]
rs59222333	1.00[EUR][1000 genomes]
rs59845678	1.00[EUR][1000 genomes]
rs6813344	1.00[EUR][1000 genomes]
rs6815620	1.00[EUR][1000 genomes]
rs72957764	1.00[EUR][1000 genomes]
rs72957767	1.00[EUR][1000 genomes]
rs72957792	1.00[EUR][1000 genomes]
rs731989	1.00[EUR][1000 genomes]
rs73853711	1.00[EUR][1000 genomes]
rs7661589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7699281	1.00[EUR][1000 genomes]

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148952000-148993600	Weak transcription	NHDF-Ad	bronchial
2	chr4:148960000-148993200	Weak transcription	Thymus	Thymus
3	chr4:148965400-148984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:148966600-149003800	Weak transcription	NH-A	brain
5	chr4:148968400-149004000	Weak transcription	HUVEC	blood vessel
6	chr4:148970000-148985800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:148970400-148985800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:148971800-148983800	Enhancers	Fetal Heart	heart
9	chr4:148973000-148989000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:148976400-148984600	Weak transcription	HSMM	muscle
11	chr4:148977800-148983600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:148978000-148983800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:148978400-148984200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:148978400-148984400	Weak transcription	HMEC	breast
15	chr4:148978400-148985600	Weak transcription	NHLF	lung
16	chr4:148978400-148993200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:148978600-148984600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:148978600-148991000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:148978800-148994000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:148979000-148983800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:148979000-148985800	Weak transcription	Ovary	ovary
22	chr4:148979200-148984200	Weak transcription	Adipose Nuclei	Adipose
23	chr4:148979800-148984200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:148980000-148985800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:148980200-148984200	Weak transcription	Fetal Stomach	stomach
26	chr4:148980200-148984200	Enhancers	Stomach Mucosa	stomach
27	chr4:148980200-148991400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:148980600-148984400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:148980600-148985800	Weak transcription	Brain Angular Gyrus	brain
30	chr4:148981000-148983600	Enhancers	Right Ventricle	heart
31	chr4:148981000-148984400	Enhancers	Fetal Kidney	kidney
32	chr4:148981000-148985800	Weak transcription	Brain Substantia Nigra	brain
33	chr4:148981000-148986200	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:148981000-148989000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:148981000-148992000	Weak transcription	Brain Germinal Matrix	brain
36	chr4:148981200-148985800	Weak transcription	Brain Anterior Caudate	brain
37	chr4:148981200-148985800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr4:148981200-148987400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:148981400-148983600	Enhancers	Right Atrium	heart
40	chr4:148981400-148984200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:148981400-148994400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:148981600-148983600	Enhancers	Left Ventricle	heart
43	chr4:148981600-148983600	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr4:148981600-148984200	Enhancers	Fetal Intestine Large	intestine
45	chr4:148981800-148993600	Strong transcription	Aorta	Aorta
46	chr4:148982000-148984000	Enhancers	Liver	Liver
47	chr4:148982000-148984400	Weak transcription	Esophagus	oesophagus
48	chr4:148982000-148985800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr4:148982000-148994400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:148982000-149001200	Weak transcription	Placenta Amnion	Placenta Amnion

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