Variant report

Variant	rs17024163
Chromosome Location	chr4:148857834-148857835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10010996	1.00[EUR][1000 genomes]
rs10012122	1.00[EUR][1000 genomes]
rs10213616	1.00[EUR][1000 genomes]
rs10519932	1.00[EUR][1000 genomes]
rs1436492	1.00[EUR][1000 genomes]
rs17023827	1.00[EUR][1000 genomes]
rs17023950	1.00[EUR][1000 genomes]
rs17023959	1.00[EUR][1000 genomes]
rs17024108	1.00[EUR][1000 genomes]
rs17024397	1.00[EUR][1000 genomes]
rs28371967	1.00[EUR][1000 genomes]
rs28647457	1.00[EUR][1000 genomes]
rs41435251	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4835111	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs55689306	1.00[EUR][1000 genomes]
rs56742479	1.00[EUR][1000 genomes]
rs58776118	1.00[EUR][1000 genomes]
rs59129054	1.00[EUR][1000 genomes]
rs59222333	1.00[EUR][1000 genomes]
rs59845678	1.00[EUR][1000 genomes]
rs6813344	1.00[EUR][1000 genomes]
rs6815620	1.00[EUR][1000 genomes]
rs6848211	1.00[EUR][1000 genomes]
rs72957764	1.00[EUR][1000 genomes]
rs72957767	1.00[EUR][1000 genomes]
rs72957792	1.00[EUR][1000 genomes]
rs731989	1.00[EUR][1000 genomes]
rs73853711	1.00[EUR][1000 genomes]
rs7661589	1.00[EUR][1000 genomes]
rs7663257	1.00[EUR][1000 genomes]
rs7699281	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1024596	chr4:148830472-148886915	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148786000-148861400	Weak transcription	Pancreas	Pancrea
2	chr4:148796800-148863200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:148796800-148866000	Weak transcription	Thymus	Thymus
4	chr4:148797400-148879600	Weak transcription	Gastric	stomach
5	chr4:148820600-148861200	Weak transcription	Esophagus	oesophagus
6	chr4:148825400-148861200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:148825400-148865800	Weak transcription	Fetal Lung	lung
8	chr4:148826600-148888200	Weak transcription	Fetal Thymus	thymus
9	chr4:148827400-148861200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:148829400-148864200	Weak transcription	Primary T cells from cord blood	blood
11	chr4:148833600-148877400	Weak transcription	Small Intestine	intestine
12	chr4:148834800-148861400	Weak transcription	Fetal Intestine Large	intestine
13	chr4:148835000-148867200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:148835000-148869000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:148836400-148861000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:148836600-148867000	Weak transcription	HMEC	breast
17	chr4:148838400-148858400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:148847400-148877200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:148849000-148861200	Weak transcription	Aorta	Aorta
20	chr4:148849200-148875600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:148849600-148863800	Weak transcription	NHLF	lung
22	chr4:148849800-148863800	Weak transcription	GM12878-XiMat	blood
23	chr4:148849800-148863800	Weak transcription	Osteobl	bone
24	chr4:148850000-148863600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:148850000-148863800	Weak transcription	NHDF-Ad	bronchial
26	chr4:148850000-148876400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:148850200-148890800	Weak transcription	HUVEC	blood vessel
28	chr4:148850400-148863800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:148850800-148858400	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:148851400-148863800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:148852800-148858000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:148853000-148863800	Weak transcription	NH-A	brain
33	chr4:148853600-148861600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:148853800-148861400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:148854600-148859600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:148854800-148861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:148854800-148866800	Weak transcription	NHEK	skin
38	chr4:148855000-148860800	Weak transcription	HSMM	muscle
39	chr4:148855000-148863600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:148855200-148858200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:148855200-148861200	Weak transcription	Left Ventricle	heart
42	chr4:148855200-148861200	Weak transcription	Psoas Muscle	Psoas
43	chr4:148855200-148861600	Weak transcription	Ovary	ovary
44	chr4:148855200-148866000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:148855400-148861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:148855400-148861200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:148855400-148861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:148855400-148861200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:148855400-148861200	Weak transcription	Adipose Nuclei	Adipose
50	chr4:148855400-148868600	Weak transcription	Fetal Intestine Small	intestine

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