Variant report

Variant	rs5536
Chromosome Location	chr4:149000693-149000694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17024360	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024397	1.00[TSI][hapmap]
rs41435251	1.00[TSI][hapmap]
rs57831907	1.00[AMR][1000 genomes]
rs6812538	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815620	1.00[TSI][hapmap]
rs6818829	1.00[AMR][1000 genomes]
rs6822617	1.00[AMR][1000 genomes]
rs6831382	1.00[AMR][1000 genomes]
rs6835464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841588	1.00[EUR][1000 genomes]
rs6846848	1.00[AMR][1000 genomes]
rs6854073	1.00[AMR][1000 genomes]
rs6858382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945916	1.00[AMR][1000 genomes]
rs7666432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7683313	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7694414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148966600-149003800	Weak transcription	NH-A	brain
2	chr4:148968400-149004000	Weak transcription	HUVEC	blood vessel
3	chr4:148982000-149001200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:148984200-149003400	Weak transcription	Stomach Mucosa	stomach
5	chr4:148988800-149004400	Weak transcription	Brain Anterior Caudate	brain
6	chr4:148992200-149035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:148994200-149004800	Weak transcription	Brain Substantia Nigra	brain
8	chr4:148994600-149002200	Weak transcription	NHDF-Ad	bronchial
9	chr4:148994600-149003000	Weak transcription	HMEC	breast
10	chr4:148995600-149003200	Weak transcription	Osteobl	bone
11	chr4:148996200-149002200	Weak transcription	Colonic Mucosa	Colon
12	chr4:148996600-149002800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr4:148996600-149004200	Weak transcription	GM12878-XiMat	blood
14	chr4:148996600-149004200	Weak transcription	NHEK	skin
15	chr4:148996800-149001000	Strong transcription	Fetal Muscle Leg	muscle
16	chr4:148996800-149002800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:148997000-149001200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:148997000-149003400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:148997000-149003400	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:148997200-149002200	Weak transcription	Fetal Intestine Large	intestine
21	chr4:148997200-149002400	Weak transcription	Right Ventricle	heart
22	chr4:148997200-149003000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr4:148997200-149003800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr4:148997200-149004600	Weak transcription	Fetal Kidney	kidney
25	chr4:148997400-149001000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr4:148997400-149001000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:148997400-149001000	Weak transcription	Spleen	Spleen
28	chr4:148997400-149002200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:148997400-149002200	Weak transcription	HSMMtube	muscle
30	chr4:148997400-149003000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:148997600-149002400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:148997600-149003400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:148997800-149028800	Weak transcription	Pancreas	Pancrea
34	chr4:148998000-149001000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:148998000-149001000	Weak transcription	Lung	lung
36	chr4:148998000-149001200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr4:148998000-149001600	Enhancers	Fetal Heart	heart
38	chr4:148998000-149002200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:148998200-149001000	Weak transcription	HSMM	muscle
40	chr4:148998200-149005200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:148998200-149005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:148998400-149001000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:148998400-149003000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:148998400-149003200	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr4:148998400-149032600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr4:148998600-149001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:148998600-149001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:148998600-149001000	Weak transcription	Fetal Stomach	stomach
49	chr4:148998600-149001200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:148998600-149002200	Weak transcription	Gastric	stomach

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