Variant report

Variant	rs6854073
Chromosome Location	chr4:149073228-149073229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17024360	1.00[AMR][1000 genomes]
rs5536	1.00[AMR][1000 genomes]
rs57831907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812538	1.00[AMR][1000 genomes]
rs6818829	1.00[AMR][1000 genomes]
rs6822617	1.00[AMR][1000 genomes]
rs6831382	1.00[AMR][1000 genomes]
rs6835464	1.00[AMR][1000 genomes]
rs6846848	1.00[AMR][1000 genomes]
rs6858382	1.00[AMR][1000 genomes]
rs6858669	1.00[AMR][1000 genomes]
rs72945916	1.00[AMR][1000 genomes]
rs7666432	1.00[AMR][1000 genomes]
rs7666483	1.00[AMR][1000 genomes]
rs7694414	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149040600-149083200	Weak transcription	Gastric	stomach
3	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:149041800-149074400	Weak transcription	Lung	lung
5	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
10	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
12	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:149055000-149073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
15	chr4:149062600-149075600	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:149063000-149076400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:149063200-149077000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:149063200-149085600	Weak transcription	Fetal Intestine Small	intestine
20	chr4:149064200-149076200	Weak transcription	Brain Angular Gyrus	brain
21	chr4:149067600-149074000	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:149067600-149087400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:149067800-149073600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:149067800-149074200	Weak transcription	Ovary	ovary
25	chr4:149067800-149074600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:149067800-149075000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:149068000-149073600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:149068000-149074400	Weak transcription	Fetal Stomach	stomach
29	chr4:149068000-149083200	Weak transcription	Left Ventricle	heart
30	chr4:149068000-149085800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:149068000-149085800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
33	chr4:149068200-149087400	Weak transcription	Esophagus	oesophagus
34	chr4:149069200-149075200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:149069200-149087400	Weak transcription	Adipose Nuclei	Adipose
36	chr4:149069600-149081000	Weak transcription	Pancreas	Pancrea
37	chr4:149069800-149078400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:149071600-149079200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:149072200-149074800	Enhancers	Brain Germinal Matrix	brain
40	chr4:149072600-149074800	Strong transcription	Liver	Liver
41	chr4:149072800-149073800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:149072800-149075800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:149073000-149073800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:149073200-149073400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr4:149073200-149085800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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