Variant report

Variant	rs17024360
Chromosome Location	chr4:149002083-149002084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17024397	1.00[TSI][hapmap]
rs41435251	1.00[TSI][hapmap]
rs5536	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57831907	1.00[AMR][1000 genomes]
rs6812538	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815620	1.00[TSI][hapmap]
rs6818829	1.00[AMR][1000 genomes]
rs6822617	1.00[AMR][1000 genomes]
rs6831382	1.00[AMR][1000 genomes]
rs6835464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6841588	1.00[EUR][1000 genomes]
rs6846848	1.00[AMR][1000 genomes]
rs6854073	1.00[AMR][1000 genomes]
rs6858382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945916	1.00[AMR][1000 genomes]
rs7666432	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666483	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7683313	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7694414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148966600-149003800	Weak transcription	NH-A	brain
2	chr4:148968400-149004000	Weak transcription	HUVEC	blood vessel
3	chr4:148984200-149003400	Weak transcription	Stomach Mucosa	stomach
4	chr4:148988800-149004400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:148992200-149035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:148994200-149004800	Weak transcription	Brain Substantia Nigra	brain
7	chr4:148994600-149002200	Weak transcription	NHDF-Ad	bronchial
8	chr4:148994600-149003000	Weak transcription	HMEC	breast
9	chr4:148995600-149003200	Weak transcription	Osteobl	bone
10	chr4:148996200-149002200	Weak transcription	Colonic Mucosa	Colon
11	chr4:148996600-149002800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr4:148996600-149004200	Weak transcription	GM12878-XiMat	blood
13	chr4:148996600-149004200	Weak transcription	NHEK	skin
14	chr4:148996800-149002800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:148997000-149003400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:148997000-149003400	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:148997200-149002200	Weak transcription	Fetal Intestine Large	intestine
18	chr4:148997200-149002400	Weak transcription	Right Ventricle	heart
19	chr4:148997200-149003000	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr4:148997200-149003800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr4:148997200-149004600	Weak transcription	Fetal Kidney	kidney
22	chr4:148997400-149002200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:148997400-149002200	Weak transcription	HSMMtube	muscle
24	chr4:148997400-149003000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:148997600-149002400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:148997600-149003400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:148997800-149028800	Weak transcription	Pancreas	Pancrea
28	chr4:148998000-149002200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:148998200-149005200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:148998200-149005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:148998400-149003000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:148998400-149003200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr4:148998400-149032600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:148998600-149002200	Weak transcription	Gastric	stomach
35	chr4:148998600-149002400	Weak transcription	Aorta	Aorta
36	chr4:148998600-149004000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr4:148998600-149004000	Weak transcription	Placenta	Placenta
38	chr4:148998600-149004000	Weak transcription	Thymus	Thymus
39	chr4:148998600-149004600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:148998600-149005800	Weak transcription	Fetal Lung	lung
41	chr4:148998600-149011600	Weak transcription	NHLF	lung
42	chr4:148998600-149015200	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:148998800-149002600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:148999000-149002200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr4:148999000-149014200	Weak transcription	Psoas Muscle	Psoas
46	chr4:148999200-149003600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr4:148999200-149029600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:148999600-149024400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:148999800-149003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr4:148999800-149003200	Strong transcription	Adipose Nuclei	Adipose

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