Variant report

Variant	rs10520709
Chromosome Location	chr15:92834585-92834586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16946712	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946714	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946715	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17520581	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17520602	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17598965	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17599020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17599051	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17599164	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17645894	1.00[ASN][1000 genomes]
rs55812579	0.95[ASN][1000 genomes]
rs58403529	1.00[ASN][1000 genomes]
rs61212227	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61238548	1.00[ASN][1000 genomes]
rs72764131	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72764134	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92832600-92840400	Weak transcription	Gastric	stomach
2	chr15:92833600-92834600	Enhancers	Left Ventricle	heart
3	chr15:92833800-92838000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:92834000-92837800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:92834000-92838000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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