Variant report

Variant	rs17599164
Chromosome Location	chr15:92850047-92850048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10520709	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946712	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946714	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946715	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17520581	1.00[ASN][1000 genomes]
rs17520602	1.00[ASN][1000 genomes]
rs17598965	1.00[ASN][1000 genomes]
rs17599020	1.00[ASN][1000 genomes]
rs17599051	1.00[ASN][1000 genomes]
rs17645894	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55812579	0.95[ASN][1000 genomes]
rs58403529	1.00[ASN][1000 genomes]
rs61212227	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61238548	1.00[ASN][1000 genomes]
rs72764131	1.00[ASN][1000 genomes]
rs72764134	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92847200-92850200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr15:92847200-92850600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr15:92847400-92850400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:92847400-92850400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:92847600-92850400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:92847800-92850600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr15:92847800-92850600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:92848000-92850200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:92848000-92850400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:92848600-92850800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:92848600-92850800	Enhancers	Fetal Brain Male	brain
12	chr15:92849000-92850400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:92849200-92850600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:92849400-92850600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr15:92849600-92850200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr15:92849800-92850200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:92850000-92850200	Enhancers	Fetal Heart	heart
18	chr15:92850000-92850400	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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