Variant report

Variant	rs10521969
Chromosome Location	chrX:31455356-31455357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12687271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12687451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12687453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12687510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12687514	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12689288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs16989652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16989672	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16989684	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16989685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16989687	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16998200	1.00[CHB][hapmap]
rs17283225	1.00[JPT][hapmap]
rs3827455	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5972417	1.00[JPT][hapmap]
rs5972422	1.00[JPT][hapmap]
rs6631344	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3447095	chrX:31441731-31519629	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv818022	chrX:31446803-31481035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv491930	chrX:31449215-31543991	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31454800-31455600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:31454800-31456600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chrX:31455000-31461800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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