Variant report
| Variant | rs6631344 |
|---|---|
| Chromosome Location | chrX:31595973-31595974 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10521969 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10521976 | 1.00[JPT][hapmap] |
| rs12687271 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12687451 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12687453 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12687510 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12687514 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12689288 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1497441 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16989652 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16989672 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16989684 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16989685 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16989687 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16989790 | 1.00[JPT][hapmap] |
| rs16989800 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16998200 | 1.00[CHB][hapmap] |
| rs17283225 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17283259 | 1.00[JPT][hapmap] |
| rs17330034 | 1.00[JPT][hapmap] |
| rs17330041 | 1.00[JPT][hapmap] |
| rs2030003 | 1.00[JPT][hapmap] |
| rs2030004 | 1.00[JPT][hapmap] |
| rs2030005 | 1.00[JPT][hapmap] |
| rs3827455 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4478725 | 1.00[JPT][hapmap] |
| rs5971585 | 1.00[JPT][hapmap] |
| rs5971593 | 1.00[JPT][hapmap] |
| rs5972406 | 0.83[CHD][hapmap];1.00[GIH][hapmap] |
| rs5972417 | 1.00[JPT][hapmap] |
| rs5972419 | 1.00[JPT][hapmap] |
| rs5972422 | 1.00[JPT][hapmap] |
| rs5972426 | 1.00[JPT][hapmap] |
| rs6527109 | 1.00[JPT][hapmap] |
| rs6527113 | 1.00[JPT][hapmap] |
| rs6628627 | 1.00[JPT][hapmap] |
| rs6628628 | 1.00[JPT][hapmap] |
| rs6631371 | 1.00[JPT][hapmap] |
| rs6631375 | 1.00[JPT][hapmap] |
| rs7049593 | 1.00[JPT][hapmap] |
| rs7061865 | 1.00[JPT][hapmap] |
| rs7065457 | 1.00[JPT][hapmap] |
| rs766671 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869389 | chrX:31207964-31963300 | Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv481964 | chrX:31270220-31672751 | Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv531098 | chrX:31462522-31824884 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv481719 | chrX:31470100-31807209 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv497882 | chrX:31537077-31619941 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv481814 | chrX:31566314-32058570 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 7 | nsv521457 | chrX:31580537-31634092 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv481764 | chrX:31587315-31944285 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
