Variant report

Variant	rs5972406
Chromosome Location	chrX:31564264-31564265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3761603	0.82[CHB][hapmap]
rs5972424	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6631344	0.83[CHD][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531098	chrX:31462522-31824884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv481719	chrX:31470100-31807209	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv527085	chrX:31491980-31577462	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv497882	chrX:31537077-31619941	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31560400-31565400	Enhancers	Hela-S3	cervix
2	chrX:31563200-31565400	Enhancers	HUVEC	blood vessel
3	chrX:31563200-31566600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:31563400-31566000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chrX:31563600-31565000	Enhancers	NH-A	brain
6	chrX:31563600-31565000	Enhancers	NHEK	skin
7	chrX:31563800-31564800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chrX:31563800-31564800	Enhancers	NHDF-Ad	bronchial
9	chrX:31563800-31565000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chrX:31563800-31565000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chrX:31563800-31565000	Enhancers	HMEC	breast
12	chrX:31563800-31566200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:31563800-31566200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chrX:31563800-31566400	Enhancers	HSMM	muscle
15	chrX:31563800-31566600	Enhancers	Osteobl	bone
16	chrX:31564000-31564400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chrX:31564000-31564800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chrX:31564200-31564600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chrX:31564200-31564600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chrX:31564200-31564800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chrX:31564200-31565000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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