Variant report

Variant	rs1053281
Chromosome Location	chr15:41580643-41580644
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41578529..41581280-chr15:41851350..41854253,2	K562	blood:
2	chr15:41579631..41582972-chr15:41599254..41603170,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC012652.1.1-1	chr15:41580181-41580723	ENSG00000247556.2

Variant related genes	Relation type
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57086203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57712847	0.86[AMR][1000 genomes]
rs7167168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168247	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176635	0.93[AMR][1000 genomes]
rs8023925	0.93[AMR][1000 genomes]
rs8033095	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41577000-41582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:41577400-41584600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41577600-41581200	Genic enhancers	Primary B cells from cord blood	blood
5	chr15:41577600-41581200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr15:41577600-41581200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:41577600-41606400	Weak transcription	Stomach Mucosa	stomach
8	chr15:41577800-41581200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:41577800-41581200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
10	chr15:41577800-41581600	Strong transcription	Placenta	Placenta
11	chr15:41577800-41581800	Genic enhancers	Primary T cells fromperipheralblood	blood
12	chr15:41577800-41583600	Weak transcription	Aorta	Aorta
13	chr15:41577800-41583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:41577800-41589000	Weak transcription	Esophagus	oesophagus
15	chr15:41577800-41591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:41578000-41581000	Strong transcription	Fetal Intestine Small	intestine
17	chr15:41578000-41581000	Weak transcription	Right Ventricle	heart
18	chr15:41578000-41581200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:41578000-41581200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr15:41578000-41581200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:41578000-41581200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:41578000-41581200	Genic enhancers	Adipose Nuclei	Adipose
23	chr15:41578000-41581200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:41578000-41581400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:41578000-41581600	Strong transcription	Fetal Kidney	kidney
26	chr15:41578000-41581600	Strong transcription	Fetal Lung	lung
27	chr15:41578000-41581600	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr15:41578000-41581600	Strong transcription	NH-A	brain
29	chr15:41578000-41582400	Genic enhancers	Liver	Liver
30	chr15:41578000-41584000	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr15:41578000-41584000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:41578000-41584600	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr15:41578000-41584600	Strong transcription	Fetal Intestine Large	intestine
34	chr15:41578000-41588400	Weak transcription	Right Atrium	heart
35	chr15:41578000-41591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:41578200-41581000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:41578200-41581200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:41578200-41581200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:41578200-41581200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr15:41578200-41581400	Strong transcription	HMEC	breast
41	chr15:41578200-41581600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:41578200-41581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:41578200-41581800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:41578200-41581800	Strong transcription	NHEK	skin
45	chr15:41578200-41582200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr15:41578200-41591800	Strong transcription	Fetal Stomach	stomach
47	chr15:41578200-41592600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:41578400-41581000	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr15:41578400-41581400	Genic enhancers	HepG2	liver
50	chr15:41578400-41581600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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