Variant report

Variant	rs1053634
Chromosome Location	chr6:144416448-144416449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
2	chr16:71843093..71843605-chr6:144416096..144416798,2	HCT-116	colon:
3	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
4	chr17:41150064..41150852-chr6:144416285..144416926,2	NB4	blood:
5	chr2:20550212..20550981-chr6:144416243..144417147,2	NB4	blood:
6	chr6:144414215..144416666-chr6:144469400..144471689,2	K562	blood:
7	chr2:20646773..20647721-chr6:144416345..144416949,2	Hela-S3	cervix:
8	chr6:144385365..144387427-chr6:144414776..144416724,2	MCF-7	breast:
9	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
10	chr6:144411393..144413934-chr6:144414975..144416479,2	MCF-7	breast:
11	chr6:143769046..143771743-chr6:144414666..144417027,2	K562	blood:
12	chr6:143998944..144000506-chr6:144415343..144418005,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143878	Chromatin interaction
ENSG00000166747	Chromatin interaction
ENSG00000055917	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000112419	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000131469	Chromatin interaction
ENSG00000135604	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2092716	0.87[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144414800-144418000	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:144415000-144416600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:144415000-144416600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr6:144415000-144416800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr6:144415000-144417600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:144415200-144417600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:144415200-144417800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr6:144415400-144417200	Active TSS	HMEC	breast
9	chr6:144415400-144417400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:144415400-144417400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:144415400-144417600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:144415400-144417600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:144415400-144417800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:144415400-144417800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:144415400-144417800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:144415600-144416600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr6:144415600-144416800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:144415600-144417400	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr6:144415600-144417400	Active TSS	Lung	lung
20	chr6:144415600-144417400	Active TSS	Pancreas	Pancrea
21	chr6:144415600-144417400	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr6:144415600-144417600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:144415600-144417600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:144415600-144417600	Active TSS	Gastric	stomach
25	chr6:144415600-144417600	Active TSS	Ovary	ovary
26	chr6:144415600-144417600	Active TSS	Psoas Muscle	Psoas
27	chr6:144415600-144417800	Active TSS	H1 Cell Line	embryonic stem cell
28	chr6:144415600-144417800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:144415600-144418200	Active TSS	Fetal Kidney	kidney
30	chr6:144415800-144416800	Bivalent/Poised TSS	HepG2	liver
31	chr6:144415800-144417200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:144415800-144417200	Active TSS	Fetal Heart	heart
33	chr6:144415800-144417400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:144415800-144417400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:144415800-144417400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:144415800-144417400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:144415800-144417400	Active TSS	Esophagus	oesophagus
38	chr6:144415800-144417400	Active TSS	A549	lung
39	chr6:144415800-144417400	Active TSS	GM12878-XiMat	blood
40	chr6:144415800-144417400	Active TSS	K562	blood
41	chr6:144415800-144417400	Active TSS	NHEK	skin
42	chr6:144415800-144417600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:144415800-144417600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:144415800-144417600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:144415800-144417600	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr6:144415800-144417600	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr6:144415800-144417600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:144415800-144417600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:144415800-144417600	Active TSS	Stomach Mucosa	stomach
50	chr6:144415800-144417600	Active TSS	HSMM	muscle

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