Variant report

Variant	nsv886738
Chromosome Location	chr6:144387698-144428387
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1225)
CpG islands
(count:976)
Chromatin interactive
region (count:77)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1225 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:144408964-144409311	K562	blood:	n/a	n/a
2	ARID3A	chr6:144426089-144426414	K562	blood:	n/a	n/a
3	ARID3A	chr6:144399074-144399368	K562	blood:	n/a	n/a
4	ARID3A	chr6:144397236-144397351	K562	blood:	n/a	n/a
5	ARID3A	chr6:144416543-144417077	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:144425795-144426408	HepG2	liver:	n/a	n/a
7	ATF1	chr6:144408965-144409417	K562	blood:	n/a	n/a
8	ATF1	chr6:144416429-144417123	K562	blood:	n/a	n/a
9	ATF2	chr6:144417177-144417813	GM12878	blood:	n/a	n/a
10	ATF2	chr6:144404258-144404737	GM12878	blood:	n/a	n/a
11	ATF2	chr6:144387812-144388667	GM12878	blood:	n/a	n/a
12	ATF2	chr6:144416473-144417054	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF2	chr6:144416455-144417090	GM12878	blood:	n/a	n/a
14	ATF2	chr6:144416462-144417050	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr6:144416408-144417155	GM12878	blood:	n/a	n/a
16	ATF3	chr6:144416430-144417141	HepG2	liver:	n/a	n/a
17	ATF3	chr6:144416528-144417060	HepG2	liver:	n/a	n/a
18	ATF3	chr6:144416591-144416859	GM12878	blood:	n/a	n/a
19	ATF3	chr6:144416403-144417001	A549	lung:	n/a	n/a
20	ATF3	chr6:144416352-144417066	K562	blood:	n/a	n/a
21	ATF3	chr6:144416579-144416895	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF3	chr6:144416251-144417019	K562	blood:	n/a	n/a
23	ATF3	chr6:144416491-144417032	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF3	chr6:144416469-144417074	GM12878	blood:	n/a	n/a
25	BACH1	chr6:144399009-144399648	K562	blood:	n/a	n/a
26	BACH1	chr6:144399139-144399294	H1-hESC	embryonic stem cell:	n/a	n/a
27	BACH1	chr6:144416791-144417014	K562	blood:	n/a	n/a
28	BATF	chr6:144388225-144388649	GM12878	blood:	n/a	n/a
29	BATF	chr6:144416588-144417027	GM12878	blood:	n/a	n/a
30	BATF	chr6:144387993-144388674	GM12878	blood:	n/a	n/a
31	BATF	chr6:144417237-144417579	GM12878	blood:	n/a	n/a
32	BCL3	chr6:144416430-144416999	A549	lung:	n/a	n/a
33	BCL3	chr6:144416382-144416957	A549	lung:	n/a	n/a
34	BCLAF1	chr6:144416413-144417155	GM12878	blood:	n/a	n/a
35	BCLAF1	chr6:144416269-144417124	GM12878	blood:	n/a	n/a
36	BCLAF1	chr6:144387761-144388753	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
37	BCLAF1	chr6:144387876-144388732	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
38	BHLHE40	chr6:144416379-144417185	K562	blood:	n/a	n/a
39	BHLHE40	chr6:144414885-144415168	K562	blood:	n/a	n/a
40	BHLHE40	chr6:144416453-144417507	GM12878	blood:	n/a	n/a
41	BHLHE40	chr6:144409040-144409375	K562	blood:	n/a	n/a
42	BHLHE40	chr6:144416334-144417148	HepG2	liver:	n/a	n/a
43	BHLHE40	chr6:144388028-144388593	GM12878	blood:	n/a	n/a
44	BRCA1	chr6:144416563-144416990	H1-hESC	embryonic stem cell:	n/a	n/a
45	BRCA1	chr6:144416422-144417101	Hela-S3	cervix:	n/a	n/a
46	BRCA1	chr6:144416396-144416994	HepG2	liver:	n/a	n/a
47	BRCA1	chr6:144416606-144416998	GM12878	blood:	n/a	n/a
48	CBX3	chr6:144408856-144409580	K562	blood:	n/a	n/a
49	CBX3	chr6:144414620-144415455	K562	blood:	n/a	n/a
50	CBX3	chr6:144416277-144417212	K562	blood:	n/a	n/a

(count:976 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:144416830-144416880	AoSMC	blood vessel:	n/a
2	chr6:144416853-144416903	HRCEpiC	kidney:	n/a
3	chr6:144416746-144416796	PrEC	prostate:	n/a
4	chr6:144388928-144388978	Caco-2	colon:	n/a
5	chr6:144419928-144419978	MCF-7	breast:	n/a
6	chr6:144417471-144417521	HNPCEpiC	eye:	n/a
7	chr6:144416850-144416900	HAEpiC	amniotic membrane:	n/a
8	chr6:144416767-144416817	K562	blood:	n/a
9	chr6:144416853-144416903	CMK	blood:	n/a
10	chr6:144415493-144415543	GM12878	blood:	n/a
11	chr6:144388928-144388978	HEK293	kidney:	embryo
12	chr6:144416220-144416270	BJ	skin:	n/a
13	chr6:144416565-144416615	PANC-1	pancreas:	n/a
14	chr6:144416990-144417040	MCF10A-Er-Src	breast:	n/a
15	chr6:144417437-144417487	H1-hESC	embryonic stem cell:	embryo
16	chr6:144419928-144419978	HCPEpiC	choroid plexus:	n/a
17	chr6:144416565-144416615	AG09309	skin:	n/a
18	chr6:144416889-144416939	HCT-116	colon:	n/a
19	chr6:144417437-144417487	T-47D	breast:	n/a
20	chr6:144416220-144416270	GM12878	blood:	n/a
21	chr6:144416853-144416903	GM12878	blood:	n/a
22	chr6:144417471-144417521	RPTEC	kidney:	n/a
23	chr6:144415493-144415543	NT2-D1	testis:	n/a
24	chr6:144416746-144416796	HL-60	blood:	n/a
25	chr6:144416830-144416880	HCM	heart:	n/a
26	chr6:144415493-144415543	CMK	blood:	n/a
27	chr6:144388928-144388978	AG09309	skin:	n/a
28	chr6:144416889-144416939	HAEpiC	amniotic membrane:	n/a
29	chr6:144416889-144416939	HCM	heart:	n/a
30	chr6:144415493-144415543	SK-N-SH_RA	brain:	n/a
31	chr6:144416990-144417040	NHDF-neo	bronchial:	n/a
32	chr6:144416850-144416900	GM06990	blood:	n/a
33	chr6:144415493-144415543	IMR90	lung:	fetal
34	chr6:144416830-144416880	NHBE	bronchial:	n/a
35	chr6:144417471-144417521	BE2_C	brain:	n/a
36	chr6:144419928-144419978	HMEC	breast:	n/a
37	chr6:144416220-144416270	ovcar-3	ovarian:	n/a
38	chr6:144416850-144416900	IMR90	lung:	fetal
39	chr6:144417537-144417587	LNCaP	prostate:	n/a
40	chr6:144417437-144417487	HCT-116	colon:	n/a
41	chr6:144416746-144416796	SAEC	small airway:	n/a
42	chr6:144415493-144415543	NB4	blood:	n/a
43	chr6:144416853-144416903	U87	brain:	n/a
44	chr6:144416830-144416880	T-47D	breast:	n/a
45	chr6:144419928-144419978	Jurkat	blood:	n/a
46	chr6:144416767-144416817	NHDF-neo	bronchial:	n/a
47	chr6:144417537-144417587	GM06990	blood:	n/a
48	chr6:144415493-144415543	HPAEpiC	pulmonary alveolar:	n/a
49	chr6:144417471-144417521	HAEpiC	amniotic membrane:	n/a
50	chr6:144416746-144416796	IMR90	lung:	fetal

(count:77 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
2	chr6:144411988..144414800-chr6:144420184..144421924,2	MCF-7	breast:
3	chr6:143830407..143832978-chr6:144413956..144415714,2	K562	blood:
4	chr6:144383547..144387232-chr6:144394807..144396986,4	K562	blood:
5	chr6:144398432..144400759-chr6:144402016..144404632,3	MCF-7	breast:
6	chr6:144398432..144400759-chr6:144402016..144404632,3	MCF-7	breast:
7	chr6:144389593..144391414-chr6:144406307..144408585,2	K562	blood:
8	chr6:144407402..144409658-chr6:144409973..144413470,4	K562	blood:
9	chr6:144411988..144414800-chr6:144420184..144421924,2	MCF-7	breast:
10	chr6:144278626..144280839-chr6:144407684..144410223,2	K562	blood:
11	chr6:144411393..144413934-chr6:144414975..144416479,2	MCF-7	breast:
12	chr6:144415208..144417995-chr6:144421426..144423709,2	MCF-7	breast:
13	chr6:144414215..144416666-chr6:144469400..144471689,2	K562	blood:
14	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
15	chr6:144411434..144414028-chr6:146131549..146134210,2	K562	blood:
16	chr6:144385365..144387427-chr6:144414776..144416724,2	MCF-7	breast:
17	chr6:144387892..144390922-chr6:144392933..144394660,3	K562	blood:
18	chr6:144426682..144429616-chr6:144537813..144539494,2	MCF-7	breast:
19	chr6:144417909..144420281-chr6:144421202..144423650,3	K562	blood:
20	chr6:144389593..144391414-chr6:144406307..144408585,2	K562	blood:
21	chr6:144328962..144330590-chr6:144399387..144401851,2	K562	blood:
22	chr6:144384660..144387560-chr6:144388575..144391098,2	MCF-7	breast:
23	chr6:144426561..144428346-chr6:144428765..144430830,2	K562	blood:
24	chr6:144385237..144387237-chr6:144395834..144399294,3	MCF-7	breast:
25	chr16:71843093..71843605-chr6:144416096..144416798,2	HCT-116	colon:
26	chr6:144383834..144386058-chr6:144408158..144410641,2	K562	blood:
27	chr6:143879698..143882158-chr6:144409174..144412151,2	K562	blood:
28	chr6:144384813..144386968-chr6:144391691..144394270,2	MCF-7	breast:
29	chr6:144384139..144386162-chr6:144415974..144418368,2	MCF-7	breast:
30	chr6:144417405..144419567-chr6:144536912..144538787,2	MCF-7	breast:
31	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
32	chr6:143831478..143833047-chr6:144412964..144415456,2	K562	blood:
33	chr2:20646773..20647721-chr6:144416345..144416949,2	Hela-S3	cervix:
34	chr6:144401988..144403565-chr6:144410455..144412770,2	K562	blood:
35	chr6:144389183..144392938-chr6:144412724..144417623,6	K562	blood:
36	chr6:144425974..144426502-chr6:144539958..144540611,2	MCF-7	breast:
37	chr6:144425599..144426717-chr6:144540007..144540848,4	MCF-7	breast:
38	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
39	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
40	chr6:144408749..144411162-chr6:144425038..144426692,2	K562	blood:
41	chr17:41150064..41150852-chr6:144416285..144416926,2	NB4	blood:
42	chr6:144384434..144386480-chr6:144392020..144394413,3	K562	blood:
43	chr6:144398410..144401320-chr6:144410082..144412407,2	K562	blood:
44	chr6:144384598..144387106-chr6:144401646..144403976,3	K562	blood:
45	chr6:144396485..144399861-chr6:144414385..144418381,5	K562	blood:
46	chr17:56734574..56736567-chr6:144411948..144414009,2	MCF-7	breast:
47	chr6:144426064..144426738-chr6:144537290..144537826,2	MCF-7	breast:
48	chr6:144425802..144426547-chr6:144540161..144540694,3	K562	blood:
49	chr2:20550212..20550981-chr6:144416243..144417147,2	NB4	blood:
50	chr6:143998295..144000747-chr6:144385501..144387723,2	K562	blood:

No data

Variant related genes	Relation type
SF3B5	TF binding region
PLAGL1	TF binding region
SF3B5	CpG island
PLAGL1	CpG island
ENSG00000055917	chromatin interactions
ENSG00000131469	chromatin interactions
ENSG00000118495	chromatin interactions
ENSG00000143878	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000169976	chromatin interactions
ENSG00000166747	chromatin interactions
ENSG00000223203	chromatin interactions
ENSG00000001036	chromatin interactions
ENSG00000135604	chromatin interactions
ENSG00000112419	chromatin interactions

Extended variants
information (count: 1547 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:1547 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1883447	chr6:144387698-144387699	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs549898895	chr6:144387716-144387717	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs571072335	chr6:144387750-144387751	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs575964947	chr6:144387783-144387784	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs112251122	chr6:144387794-144387795	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs367937998	chr6:144387820-144387821	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs532195259	chr6:144387860-144387861	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs371441888	chr6:144387915-144387916	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs547239144	chr6:144387934-144387935	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs565843059	chr6:144387959-144387960	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs536588367	chr6:144388032-144388033	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs187491693	chr6:144388060-144388061	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs569659759	chr6:144388104-144388105	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs535243443	chr6:144388136-144388137	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs115285026	chr6:144388181-144388182	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs578183861	chr6:144388232-144388233	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs143044964	chr6:144388295-144388296	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs554386705	chr6:144388301-144388302	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs191595881	chr6:144388304-144388305	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs146068692	chr6:144388329-144388330	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs561112227	chr6:144388333-144388334	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs576401805	chr6:144388335-144388336	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs543481150	chr6:144388352-144388353	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs565038674	chr6:144388355-144388356	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs532131947	chr6:144388409-144388410	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs575383052	chr6:144388440-144388441	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs528336899	chr6:144388462-144388463	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs368694841	chr6:144388478-144388479	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs183212086	chr6:144388488-144388489	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs559546752	chr6:144388514-144388515	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs529923362	chr6:144388521-144388522	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs375832390	chr6:144388522-144388523	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs548497262	chr6:144388547-144388548	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs569523695	chr6:144388556-144388557	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs537049046	chr6:144388557-144388558	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs552262465	chr6:144388598-144388599	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs140037005	chr6:144388607-144388608	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs187825312	chr6:144388627-144388628	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs377138334	chr6:144388630-144388631	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs377196899	chr6:144388633-144388634	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs375788644	chr6:144388652-144388653	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs575131450	chr6:144388653-144388654	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs554054114	chr6:144388660-144388661	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs4407738	chr6:144388681-144388682	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs192170579	chr6:144388697-144388698	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs544842306	chr6:144388698-144388699	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs184486361	chr6:144388703-144388704	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs190262802	chr6:144388715-144388716	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs555262968	chr6:144388727-144388728	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs575980208	chr6:144388777-144388778	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17142309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:702 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144386600-144387800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:144386600-144388000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:144386600-144388000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:144386600-144388200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:144386800-144387800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144386800-144387800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:144386800-144388000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:144386800-144388000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:144386800-144388000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:144386800-144388000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:144386800-144388200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:144386800-144388200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:144387000-144388000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:144387000-144388000	Weak transcription	K562	blood
16	chr6:144387400-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:144387600-144387800	Flanking Active TSS	GM12878-XiMat	blood
19	chr6:144387600-144388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:144387800-144388000	Active TSS	GM12878-XiMat	blood
21	chr6:144387800-144388000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:144387800-144388200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:144388000-144388200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr6:144388000-144388200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:144388000-144388200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:144388000-144388200	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:144388000-144388200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:144388000-144388400	Enhancers	K562	blood
32	chr6:144388000-144388600	Enhancers	Fetal Thymus	thymus
33	chr6:144388000-144388600	Flanking Active TSS	GM12878-XiMat	blood
34	chr6:144388000-144388600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:144388000-144389400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:144388200-144388600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:144388200-144388600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr6:144388200-144389200	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr6:144388400-144388600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:144388400-144389800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:144388400-144396600	Weak transcription	K562	blood
42	chr6:144388600-144389200	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr6:144388600-144390200	Enhancers	GM12878-XiMat	blood
44	chr6:144389800-144390000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:144390200-144395000	Weak transcription	GM12878-XiMat	blood
46	chr6:144395000-144396600	Enhancers	GM12878-XiMat	blood
47	chr6:144396200-144396600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:144396200-144396800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr6:144396400-144396600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:144396600-144397000	Flanking Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links