Variant report

Variant	rs1883447
Chromosome Location	chr6:144387698-144387699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:144387354-144388505	K562	blood:	n/a	n/a
2	POLR2A	chr6:144387470-144388632	GM12891	blood:	n/a	n/a
3	POLR2A	chr6:144387483-144388610	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143998295..144000747-chr6:144385501..144387723,2	K562	blood:
2	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
3	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
4	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
5	chr6:143848305..143850454-chr6:144386141..144388297,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12211413	0.86[CHB][hapmap]
rs13195390	0.86[CHB][hapmap]
rs13210804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28677011	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34372511	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35096948	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35575158	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35871914	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35965932	0.93[ASN][1000 genomes]
rs56195768	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68151517	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6928532	0.92[CHB][hapmap]
rs6928842	0.94[ASN][1000 genomes]
rs6929066	0.92[CHB][hapmap]
rs71564463	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73008258	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7752460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9496851	0.94[ASN][1000 genomes]
rs9496856	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144386600-144387800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:144386600-144388000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:144386600-144388000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:144386600-144388200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:144386800-144387800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:144386800-144387800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:144386800-144388000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:144386800-144388000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:144386800-144388000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:144386800-144388000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:144386800-144388200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:144386800-144388200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:144387000-144388000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:144387000-144388000	Weak transcription	K562	blood
16	chr6:144387400-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:144387600-144387800	Flanking Active TSS	GM12878-XiMat	blood
19	chr6:144387600-144388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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