Variant report

Variant	rs35575158
Chromosome Location	chr6:144414836-144414837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143830407..143832978-chr6:144413956..144415714,2	K562	blood:
2	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
3	chr6:144414215..144416666-chr6:144469400..144471689,2	K562	blood:
4	chr6:143831478..143833047-chr6:144412964..144415456,2	K562	blood:
5	chr6:144385365..144387427-chr6:144414776..144416724,2	MCF-7	breast:
6	chr6:144355070..144357503-chr6:144413513..144415682,2	K562	blood:
7	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
8	chr6:143769046..143771743-chr6:144414666..144417027,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223203	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000135604	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13210804	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883447	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28677011	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34372511	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35096948	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35871914	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35965932	1.00[ASN][1000 genomes]
rs56195768	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68151517	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6928842	0.99[ASN][1000 genomes]
rs6929175	0.89[AFR][1000 genomes]
rs71564463	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73008258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752460	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496851	0.96[ASN][1000 genomes]
rs9496856	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144404200-144415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:144404200-144415000	Weak transcription	Thymus	Thymus
3	chr6:144404800-144415200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:144404800-144415200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:144405000-144415600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:144405400-144415000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:144405400-144415000	Weak transcription	Fetal Kidney	kidney
8	chr6:144405400-144415200	Weak transcription	Placenta	Placenta
9	chr6:144405600-144415200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:144405800-144415000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:144406000-144416000	Weak transcription	Aorta	Aorta
12	chr6:144407600-144415200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:144407600-144415200	Weak transcription	Fetal Stomach	stomach
14	chr6:144407600-144415400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:144412000-144415000	Weak transcription	HMEC	breast
16	chr6:144412400-144415000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:144412800-144415000	Weak transcription	HUVEC	blood vessel
18	chr6:144413200-144415000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:144413600-144415400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:144413800-144415000	Genic enhancers	Dnd41	blood
21	chr6:144413800-144415200	Weak transcription	A549	lung
22	chr6:144414000-144415200	Enhancers	Fetal Brain Female	brain
23	chr6:144414000-144415600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:144414200-144415400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:144414200-144415400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:144414200-144415600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:144414400-144415000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:144414400-144415000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:144414400-144415200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:144414400-144415200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:144414400-144415200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr6:144414400-144415600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr6:144414600-144415000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:144414600-144415000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:144414600-144415000	Enhancers	Brain Germinal Matrix	brain
36	chr6:144414600-144415000	Genic enhancers	Esophagus	oesophagus
37	chr6:144414600-144415000	Genic enhancers	Fetal Muscle Leg	muscle
38	chr6:144414600-144415000	Genic enhancers	Pancreas	Pancrea
39	chr6:144414600-144415000	Flanking Active TSS	GM12878-XiMat	blood
40	chr6:144414600-144415200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:144414600-144415200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr6:144414600-144415200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:144414600-144415200	Enhancers	Fetal Intestine Large	intestine
44	chr6:144414600-144415200	Genic enhancers	Fetal Intestine Small	intestine
45	chr6:144414600-144415200	Active TSS	Hela-S3	cervix
46	chr6:144414600-144415400	Enhancers	Primary T cells from cord blood	blood
47	chr6:144414600-144415400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:144414600-144415400	Enhancers	Fetal Lung	lung
49	chr6:144414600-144415400	Enhancers	Fetal Thymus	thymus
50	chr6:144414600-144415400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links