Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:144398410..144401320-chr6:144410082..144412407,2	K562	blood:
2	chr6:144328962..144330590-chr6:144399387..144401851,2	K562	blood:
3	chr6:144398432..144400759-chr6:144402016..144404632,3	MCF-7	breast:
4	chr6:144396485..144399861-chr6:144414385..144418381,5	K562	blood:

Variant related genes	Relation type
ENSG00000169976	Chromatin interaction
ENSG00000118495	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10457757	0.81[CHB][hapmap]
rs12211413	0.86[CHB][hapmap]
rs13195390	0.86[CHB][hapmap]
rs1883447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28677011	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34372511	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35096948	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35575158	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35871914	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35965932	0.99[ASN][1000 genomes]
rs56195768	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68151517	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928532	0.93[CHB][hapmap]
rs6928842	1.00[ASN][1000 genomes]
rs6929066	0.93[CHB][hapmap];0.87[YRI][hapmap]
rs71564463	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73008258	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496851	0.97[ASN][1000 genomes]
rs9496856	1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144396600-144414800	Weak transcription	Gastric	stomach
3	chr6:144397800-144402000	Weak transcription	GM12878-XiMat	blood
4	chr6:144398800-144400200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:144398800-144400200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:144398800-144400200	Enhancers	K562	blood
7	chr6:144399000-144399800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:144399200-144400400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:144399400-144413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
11	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach

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