Variant report

Variant	rs12211413
Chromosome Location	chr6:144384080-144384081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144382541..144385412-chr6:144408158..144411278,3	K562	blood:
2	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
3	chr6:143882307..143884065-chr6:144383379..144386197,2	K562	blood:
4	chr6:144383030..144384886-chr6:144536136..144538729,2	K562	blood:

Variant related genes	Relation type
ENSG00000169976	Chromatin interaction
ENSG00000235740	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457757	0.81[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12204640	0.82[YRI][hapmap]
rs13195390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210804	0.86[CHB][hapmap]
rs1883447	0.86[CHB][hapmap]
rs34047741	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34320388	0.88[ASN][1000 genomes]
rs34554103	0.88[ASN][1000 genomes]
rs34911349	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35283947	0.88[ASN][1000 genomes]
rs35465184	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56081266	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727612	0.99[ASN][1000 genomes]
rs7752460	0.86[CHB][hapmap]
rs9390155	0.82[YRI][hapmap]
rs9496856	0.85[CHB][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384600	Weak transcription	Gastric	stomach
2	chr6:144376800-144384200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:144377600-144384200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:144383600-144384400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:144383600-144384400	Enhancers	Brain Substantia Nigra	brain
6	chr6:144383600-144387000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:144383800-144384200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:144383800-144384200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:144383800-144384200	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:144383800-144384200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:144383800-144384200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:144383800-144384200	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:144383800-144384200	Enhancers	Fetal Thymus	thymus
14	chr6:144383800-144384200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr6:144383800-144384400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:144383800-144384400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:144383800-144384400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:144383800-144384400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:144383800-144384400	Enhancers	Brain Anterior Caudate	brain
20	chr6:144383800-144384400	Bivalent Enhancer	HepG2	liver
21	chr6:144383800-144384600	Flanking Active TSS	GM12878-XiMat	blood
22	chr6:144383800-144385000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:144383800-144385000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:144383800-144385200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr6:144384000-144384200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:144384000-144384200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr6:144384000-144384200	Enhancers	Primary B cells from cord blood	blood
29	chr6:144384000-144384200	Enhancers	Primary T cells from cord blood	blood
30	chr6:144384000-144384200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:144384000-144384200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:144384000-144384200	Enhancers	Adipose Nuclei	Adipose
33	chr6:144384000-144384200	Enhancers	Brain Hippocampus Middle	brain
34	chr6:144384000-144384200	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:144384000-144384200	Enhancers	Colonic Mucosa	Colon
36	chr6:144384000-144384200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
37	chr6:144384000-144384200	Active TSS	Monocytes-CD14+_RO01746	blood
38	chr6:144384000-144384400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
39	chr6:144384000-144384400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:144384000-144384400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:144384000-144384400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:144384000-144384400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:144384000-144384400	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:144384000-144384400	Bivalent Enhancer	Brain Germinal Matrix	brain
45	chr6:144384000-144384400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr6:144384000-144384400	Bivalent Enhancer	Fetal Intestine Small	intestine
47	chr6:144384000-144384600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:144384000-144384600	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr6:144384000-144384800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:144384000-144384800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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