Variant report

Variant	rs9390155
Chromosome Location	chr6:144423056-144423057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11155342	0.88[CEU][hapmap]
rs12190149	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12204640	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12211413	0.82[YRI][hapmap]
rs12215402	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12216135	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs17073338	0.88[CEU][hapmap]
rs57916093	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73008243	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73008257	0.89[EUR][1000 genomes]
rs9386058	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144417800-144425800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:144417800-144432600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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