Variant report

Variant	rs9386058
Chromosome Location	chr6:144404463-144404464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57915271..57918121-chr6:144402731..144404507,2	MCF-7	breast:
2	chr6:144398432..144400759-chr6:144402016..144404632,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11155342	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12190149	0.84[EUR][1000 genomes]
rs12204640	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12216135	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17073338	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs73008243	0.82[EUR][1000 genomes]
rs73008257	0.81[EUR][1000 genomes]
rs9390153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9390155	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144396600-144414800	Weak transcription	Gastric	stomach
3	chr6:144399400-144413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
5	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:144399800-144414800	Weak transcription	Ovary	ovary
7	chr6:144400200-144408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:144402000-144404800	Enhancers	GM12878-XiMat	blood
9	chr6:144403200-144414800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:144403400-144405400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:144404000-144406000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:144404000-144406600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:144404000-144414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:144404200-144404800	Enhancers	A549	lung
15	chr6:144404200-144408600	Weak transcription	K562	blood
16	chr6:144404200-144414600	Weak transcription	Esophagus	oesophagus
17	chr6:144404200-144414800	Weak transcription	Lung	lung
18	chr6:144404200-144415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:144404200-144415000	Weak transcription	Thymus	Thymus
20	chr6:144404400-144404800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr6:144404400-144406200	Weak transcription	Fetal Stomach	stomach
22	chr6:144404400-144414000	Weak transcription	Fetal Brain Female	brain

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