Variant report

Variant	rs12204640
Chromosome Location	chr6:144395930-144395931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11155342	0.88[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs12190149	0.98[EUR][1000 genomes]
rs12211413	0.82[YRI][hapmap]
rs12215402	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12216135	0.88[CEU][hapmap]
rs17073338	0.88[CEU][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs57916093	0.93[EUR][1000 genomes]
rs73008243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73008257	0.95[EUR][1000 genomes]
rs9386058	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs9390153	0.84[EUR][1000 genomes]
rs9390155	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144388400-144396600	Weak transcription	K562	blood
3	chr6:144395000-144396600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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