Variant report

Variant	rs547239144
Chromosome Location	chr6:144387934-144387935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF3	chr6:144387905-144388143	GM12878	blood:	n/a	n/a
2	MTA3	chr6:144387771-144388717	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:144387354-144388505	K562	blood:	n/a	n/a
4	BCLAF1	chr6:144387876-144388732	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
5	BCLAF1	chr6:144387761-144388753	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
6	NFIC	chr6:144387880-144388675	GM12878	blood:	n/a	n/a
7	RUNX3	chr6:144387879-144388597	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:144387891-144388499	GM12878	blood:	n/a	n/a
9	RUNX3	chr6:144387907-144388687	GM12878	blood:	n/a	n/a
10	RELA	chr6:144387898-144388618	GM12878	blood:	n/a	n/a
11	STAT5A	chr6:144387824-144388696	GM12878	blood:	n/a	chr6:144388413-144388424
12	GATA2	chr6:144387908-144388220	SH-SY5Y	brain:	n/a	chr6:144388190-144388200
13	POLR2A	chr6:144387470-144388632	GM12891	blood:	n/a	n/a
14	RELA	chr6:144387903-144388629	GM19193	blood:	n/a	n/a
15	GATA3	chr6:144387884-144388273	SH-SY5Y	brain:	n/a	chr6:144388190-144388200
16	GATA1	chr6:144387924-144388192	PBDEFetal	blood:	n/a	n/a
17	ATF2	chr6:144387812-144388667	GM12878	blood:	n/a	n/a
18	NFIC	chr6:144387819-144388676	GM12878	blood:	n/a	n/a
19	GATA1	chr6:144387823-144388420	PBDE	blood:	n/a	chr6:144388190-144388200
20	NFATC1	chr6:144387865-144388642	GM12878	blood:	n/a	n/a
21	TCF3	chr6:144387924-144388112	GM12878	blood:	n/a	n/a
22	CEBPB	chr6:144387856-144388083	HepG2	liver:	n/a	chr6:144387941-144387952
23	POLR2A	chr6:144387483-144388610	GM12878	blood:	n/a	n/a
24	PML	chr6:144387931-144388666	GM12878	blood:	n/a	n/a
25	RELA	chr6:144387847-144388590	GM18951	blood:	n/a	n/a
26	NFATC1	chr6:144387932-144388581	GM12878	blood:	n/a	n/a
27	IKZF1	chr6:144387877-144388586	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:144382193..144387951-chr6:144413760..144419366,13	K562	blood:
2	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
3	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
4	chr6:143848305..143850454-chr6:144386141..144388297,2	MCF-7	breast:
5	chr6:144387892..144390922-chr6:144392933..144394660,3	K562	blood:

Variant related genes	Relation type
PLAGL1	TF binding region
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144386600-144388000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:144386600-144388000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:144386600-144388200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:144386800-144388000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:144386800-144388000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:144386800-144388000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:144386800-144388000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:144386800-144388200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:144386800-144388200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144387000-144388000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:144387000-144388000	Weak transcription	K562	blood
13	chr6:144387400-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:144387600-144388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:144387800-144388000	Active TSS	GM12878-XiMat	blood
17	chr6:144387800-144388000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:144387800-144388200	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links