Variant report

Variant	rs576401805
Chromosome Location	chr6:144388335-144388336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:144388262-144388472	GM12891	blood:	n/a	n/a
2	EBF1	chr6:144388144-144388491	GM12878	blood:	n/a	n/a
3	ZNF384	chr6:144388184-144388656	GM12878	blood:	n/a	n/a
4	EBF1	chr6:144388180-144388522	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:144388186-144388536	GM12891	blood:	n/a	n/a
6	RCOR1	chr6:144388018-144388409	GM12878	blood:	n/a	n/a
7	MTA3	chr6:144387771-144388717	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:144387354-144388505	K562	blood:	n/a	n/a
9	SPI1	chr6:144387966-144388575	GM12891	blood:	n/a	chr6:144388193-144388202
10	BCLAF1	chr6:144387876-144388732	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
11	EBF1	chr6:144388107-144388533	GM12878	blood:	n/a	n/a
12	BCLAF1	chr6:144387761-144388753	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
13	POLR2A	chr6:144388187-144388533	GM12891	blood:	n/a	n/a
14	IRF4	chr6:144388005-144388658	GM12878	blood:	n/a	n/a
15	NFIC	chr6:144387880-144388675	GM12878	blood:	n/a	n/a
16	RUNX3	chr6:144387879-144388597	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:144387891-144388499	GM12878	blood:	n/a	n/a
18	YY1	chr6:144388227-144388658	K562	blood:	n/a	n/a
19	PML	chr6:144388011-144388518	GM12878	blood:	n/a	n/a
20	BATF	chr6:144387993-144388674	GM12878	blood:	n/a	n/a
21	WRNIP1	chr6:144387999-144388537	GM12878	blood:	n/a	n/a
22	RUNX3	chr6:144387907-144388687	GM12878	blood:	n/a	n/a
23	POLR2A	chr6:144388100-144388578	GM12892	blood:	n/a	n/a
24	YY1	chr6:144388231-144388729	GM12878	blood:	n/a	n/a
25	BATF	chr6:144388225-144388649	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:144388229-144388451	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:144388100-144388504	GM12892	blood:	n/a	n/a
28	IRF4	chr6:144388160-144388723	GM12878	blood:	n/a	n/a
29	SMC3	chr6:144388088-144388499	GM12878	blood:	n/a	n/a
30	RELA	chr6:144387898-144388618	GM12878	blood:	n/a	n/a
31	STAT5A	chr6:144387824-144388696	GM12878	blood:	n/a	chr6:144388413-144388424
32	POLR2A	chr6:144388185-144388631	GM12878	blood:	n/a	n/a
33	SPI1	chr6:144388014-144388397	GM12891	blood:	n/a	chr6:144388193-144388202
34	YY1	chr6:144388181-144388730	GM12892	blood:	n/a	n/a
35	RELA	chr6:144387944-144388639	GM19099	blood:	n/a	n/a
36	BHLHE40	chr6:144388028-144388593	GM12878	blood:	n/a	n/a
37	TBL1XR1	chr6:144387959-144388551	GM12878	blood:	n/a	n/a
38	POLR2A	chr6:144387470-144388632	GM12891	blood:	n/a	n/a
39	MAX	chr6:144387994-144388482	GM12878	blood:	n/a	n/a
40	EP300	chr6:144388176-144388538	GM12878	blood:	n/a	chr6:144388188-144388202 chr6:144388414-144388428
41	RELA	chr6:144387903-144388629	GM19193	blood:	n/a	n/a
42	STAT3	chr6:144387984-144388489	GM12878	blood:	n/a	chr6:144388413-144388424
43	CHD2	chr6:144388096-144388544	GM12878	blood:	n/a	n/a
44	FOXM1	chr6:144388021-144388719	GM12878	blood:	n/a	n/a
45	POLR2A	chr6:144388189-144388547	GM12878	blood:	n/a	n/a
46	FOXM1	chr6:144387935-144388593	GM12878	blood:	n/a	n/a
47	ATF2	chr6:144387812-144388667	GM12878	blood:	n/a	n/a
48	NFIC	chr6:144387819-144388676	GM12878	blood:	n/a	n/a
49	POLR2A	chr6:144388187-144388432	GM12891	blood:	n/a	n/a
50	GATA1	chr6:144387823-144388420	PBDE	blood:	n/a	chr6:144388190-144388200

No.	Distal block	Cell Line	Cell type
1	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
2	chr6:144382841..144386965-chr6:144388333..144393468,6	MCF-7	breast:
3	chr6:144387892..144390922-chr6:144392933..144394660,3	K562	blood:

Variant related genes	Relation type
PLAGL1	TF binding region
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144387400-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:144387600-144388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:144388000-144388400	Enhancers	K562	blood
9	chr6:144388000-144388600	Enhancers	Fetal Thymus	thymus
10	chr6:144388000-144388600	Flanking Active TSS	GM12878-XiMat	blood
11	chr6:144388000-144388600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:144388000-144389400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:144388200-144388600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:144388200-144388600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:144388200-144389200	Enhancers	Primary neutrophils fromperipheralblood	blood

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