Variant report

Variant	rs552262465
Chromosome Location	chr6:144388598-144388599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:144388184-144388656	GM12878	blood:	n/a	n/a
2	MTA3	chr6:144387771-144388717	GM12878	blood:	n/a	n/a
3	BCLAF1	chr6:144387876-144388732	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
4	BCLAF1	chr6:144387761-144388753	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
5	IRF4	chr6:144388005-144388658	GM12878	blood:	n/a	n/a
6	NFIC	chr6:144387880-144388675	GM12878	blood:	n/a	n/a
7	CTCF	chr6:144388466-144388646	GM12878	blood:	n/a	n/a
8	YY1	chr6:144388227-144388658	K562	blood:	n/a	n/a
9	BATF	chr6:144387993-144388674	GM12878	blood:	n/a	n/a
10	RUNX3	chr6:144387907-144388687	GM12878	blood:	n/a	n/a
11	CTCF	chr6:144388511-144388616	GM19239	blood:	n/a	n/a
12	YY1	chr6:144388231-144388729	GM12878	blood:	n/a	n/a
13	BATF	chr6:144388225-144388649	GM12878	blood:	n/a	n/a
14	IRF4	chr6:144388160-144388723	GM12878	blood:	n/a	n/a
15	RELA	chr6:144387898-144388618	GM12878	blood:	n/a	n/a
16	STAT5A	chr6:144387824-144388696	GM12878	blood:	n/a	chr6:144388413-144388424
17	POLR2A	chr6:144388185-144388631	GM12878	blood:	n/a	n/a
18	YY1	chr6:144388181-144388730	GM12892	blood:	n/a	n/a
19	CTCF	chr6:144388481-144388606	GM19238	blood:	n/a	n/a
20	RELA	chr6:144387944-144388639	GM19099	blood:	n/a	n/a
21	POLR2A	chr6:144387470-144388632	GM12891	blood:	n/a	n/a
22	RELA	chr6:144387903-144388629	GM19193	blood:	n/a	n/a
23	FOXM1	chr6:144388021-144388719	GM12878	blood:	n/a	n/a
24	ATF2	chr6:144387812-144388667	GM12878	blood:	n/a	n/a
25	NFIC	chr6:144387819-144388676	GM12878	blood:	n/a	n/a
26	NFATC1	chr6:144387865-144388642	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:144387483-144388610	GM12878	blood:	n/a	n/a
28	TAF1	chr6:144388074-144388661	GM12878	blood:	n/a	n/a
29	YY1	chr6:144388210-144388602	GM12891	blood:	n/a	n/a
30	YY1	chr6:144387966-144388655	GM12878	blood:	n/a	n/a
31	POLR2A	chr6:144387968-144388651	GM12892	blood:	n/a	n/a
32	PML	chr6:144387931-144388666	GM12878	blood:	n/a	n/a
33	MAZ	chr6:144388244-144388611	GM12878	blood:	n/a	n/a
34	CTCF	chr6:144388504-144388612	GM12891	blood:	n/a	n/a
35	CTCF	chr6:144388485-144388598	GM19240	blood:	n/a	n/a
36	POLR2A	chr6:144388057-144388620	GM12892	blood:	n/a	n/a
37	EP300	chr6:144388062-144388639	GM12878	blood:	n/a	chr6:144388188-144388202 chr6:144388414-144388428
38	YY1	chr6:144388196-144388640	GM12892	blood:	n/a	n/a
39	ZNF384	chr6:144388484-144388636	K562	blood:	n/a	n/a
40	POLR2A	chr6:144387995-144388656	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:144384660..144387560-chr6:144388575..144391098,2	MCF-7	breast:
2	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
3	chr6:144382841..144386965-chr6:144388333..144393468,6	MCF-7	breast:
4	chr6:144387892..144390922-chr6:144392933..144394660,3	K562	blood:

Variant related genes	Relation type
PLAGL1	TF binding region
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:144387600-144388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:144388000-144388600	Enhancers	Fetal Thymus	thymus
5	chr6:144388000-144388600	Flanking Active TSS	GM12878-XiMat	blood
6	chr6:144388000-144388600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:144388000-144389400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:144388200-144388600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:144388200-144388600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:144388200-144389200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:144388400-144388600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:144388400-144389800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:144388400-144396600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links