Variant report

Variant	rs187825312
Chromosome Location	chr6:144388627-144388628
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:144388184-144388656	GM12878	blood:	n/a	n/a
2	MTA3	chr6:144387771-144388717	GM12878	blood:	n/a	n/a
3	BCLAF1	chr6:144387876-144388732	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
4	BCLAF1	chr6:144387761-144388753	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
5	IRF4	chr6:144388005-144388658	GM12878	blood:	n/a	n/a
6	NFIC	chr6:144387880-144388675	GM12878	blood:	n/a	n/a
7	CTCF	chr6:144388466-144388646	GM12878	blood:	n/a	n/a
8	YY1	chr6:144388227-144388658	K562	blood:	n/a	n/a
9	BATF	chr6:144387993-144388674	GM12878	blood:	n/a	n/a
10	RUNX3	chr6:144387907-144388687	GM12878	blood:	n/a	n/a
11	YY1	chr6:144388231-144388729	GM12878	blood:	n/a	n/a
12	BATF	chr6:144388225-144388649	GM12878	blood:	n/a	n/a
13	IRF4	chr6:144388160-144388723	GM12878	blood:	n/a	n/a
14	STAT5A	chr6:144387824-144388696	GM12878	blood:	n/a	chr6:144388413-144388424
15	POLR2A	chr6:144388185-144388631	GM12878	blood:	n/a	n/a
16	YY1	chr6:144388181-144388730	GM12892	blood:	n/a	n/a
17	RELA	chr6:144387944-144388639	GM19099	blood:	n/a	n/a
18	POLR2A	chr6:144387470-144388632	GM12891	blood:	n/a	n/a
19	RELA	chr6:144387903-144388629	GM19193	blood:	n/a	n/a
20	FOXM1	chr6:144388021-144388719	GM12878	blood:	n/a	n/a
21	ATF2	chr6:144387812-144388667	GM12878	blood:	n/a	n/a
22	NFIC	chr6:144387819-144388676	GM12878	blood:	n/a	n/a
23	NFATC1	chr6:144387865-144388642	GM12878	blood:	n/a	n/a
24	TAF1	chr6:144388074-144388661	GM12878	blood:	n/a	n/a
25	YY1	chr6:144387966-144388655	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:144387968-144388651	GM12892	blood:	n/a	n/a
27	PML	chr6:144387931-144388666	GM12878	blood:	n/a	n/a
28	EP300	chr6:144388062-144388639	GM12878	blood:	n/a	chr6:144388188-144388202 chr6:144388414-144388428
29	YY1	chr6:144388196-144388640	GM12892	blood:	n/a	n/a
30	ZNF384	chr6:144388484-144388636	K562	blood:	n/a	n/a
31	POLR2A	chr6:144387995-144388656	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:144384660..144387560-chr6:144388575..144391098,2	MCF-7	breast:
2	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
3	chr6:144382841..144386965-chr6:144388333..144393468,6	MCF-7	breast:
4	chr6:144387892..144390922-chr6:144392933..144394660,3	K562	blood:

Variant related genes	Relation type
PLAGL1	TF binding region
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:144388000-144389400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:144388200-144389200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:144388400-144389800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:144388400-144396600	Weak transcription	K562	blood
7	chr6:144388600-144389200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:144388600-144390200	Enhancers	GM12878-XiMat	blood

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