Variant report

Variant	rs115285026
Chromosome Location	chr6:144388181-144388182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr6:144388144-144388491	GM12878	blood:	n/a	n/a
2	EBF1	chr6:144388180-144388522	GM12878	blood:	n/a	n/a
3	RCOR1	chr6:144388018-144388409	GM12878	blood:	n/a	n/a
4	MTA3	chr6:144387771-144388717	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:144387354-144388505	K562	blood:	n/a	n/a
6	SPI1	chr6:144387966-144388575	GM12891	blood:	n/a	chr6:144388193-144388202
7	BCLAF1	chr6:144387876-144388732	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
8	EBF1	chr6:144388107-144388533	GM12878	blood:	n/a	n/a
9	BCLAF1	chr6:144387761-144388753	GM12878	blood:	n/a	chr6:144388419-144388428 chr6:144388193-144388202
10	IRF4	chr6:144388005-144388658	GM12878	blood:	n/a	n/a
11	NFIC	chr6:144387880-144388675	GM12878	blood:	n/a	n/a
12	RUNX3	chr6:144387879-144388597	GM12878	blood:	n/a	n/a
13	POLR2A	chr6:144387891-144388499	GM12878	blood:	n/a	n/a
14	PML	chr6:144388011-144388518	GM12878	blood:	n/a	n/a
15	BATF	chr6:144387993-144388674	GM12878	blood:	n/a	n/a
16	WRNIP1	chr6:144387999-144388537	GM12878	blood:	n/a	n/a
17	RUNX3	chr6:144387907-144388687	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:144388100-144388578	GM12892	blood:	n/a	n/a
19	POLR2A	chr6:144388100-144388504	GM12892	blood:	n/a	n/a
20	IRF4	chr6:144388160-144388723	GM12878	blood:	n/a	n/a
21	SMC3	chr6:144388088-144388499	GM12878	blood:	n/a	n/a
22	RELA	chr6:144387898-144388618	GM12878	blood:	n/a	n/a
23	STAT5A	chr6:144387824-144388696	GM12878	blood:	n/a	chr6:144388413-144388424
24	SPI1	chr6:144388014-144388397	GM12891	blood:	n/a	chr6:144388193-144388202
25	YY1	chr6:144388181-144388730	GM12892	blood:	n/a	n/a
26	RELA	chr6:144387944-144388639	GM19099	blood:	n/a	n/a
27	BHLHE40	chr6:144388028-144388593	GM12878	blood:	n/a	n/a
28	TBL1XR1	chr6:144387959-144388551	GM12878	blood:	n/a	n/a
29	GATA2	chr6:144387908-144388220	SH-SY5Y	brain:	n/a	chr6:144388190-144388200
30	POLR2A	chr6:144387470-144388632	GM12891	blood:	n/a	n/a
31	MAX	chr6:144387994-144388482	GM12878	blood:	n/a	n/a
32	EP300	chr6:144388176-144388538	GM12878	blood:	n/a	chr6:144388188-144388202 chr6:144388414-144388428
33	RELA	chr6:144387903-144388629	GM19193	blood:	n/a	n/a
34	STAT3	chr6:144387984-144388489	GM12878	blood:	n/a	chr6:144388413-144388424
35	CHD2	chr6:144388096-144388544	GM12878	blood:	n/a	n/a
36	FOXM1	chr6:144388021-144388719	GM12878	blood:	n/a	n/a
37	FOXM1	chr6:144387935-144388593	GM12878	blood:	n/a	n/a
38	GATA3	chr6:144387884-144388273	SH-SY5Y	brain:	n/a	chr6:144388190-144388200
39	GATA1	chr6:144387924-144388192	PBDEFetal	blood:	n/a	n/a
40	ATF2	chr6:144387812-144388667	GM12878	blood:	n/a	n/a
41	NFIC	chr6:144387819-144388676	GM12878	blood:	n/a	n/a
42	GATA1	chr6:144387823-144388420	PBDE	blood:	n/a	chr6:144388190-144388200
43	NFATC1	chr6:144387865-144388642	GM12878	blood:	n/a	n/a
44	POLR2A	chr6:144387483-144388610	GM12878	blood:	n/a	n/a
45	TAF1	chr6:144388074-144388661	GM12878	blood:	n/a	n/a
46	YY1	chr6:144387966-144388655	GM12878	blood:	n/a	n/a
47	POLR2A	chr6:144387968-144388651	GM12892	blood:	n/a	n/a
48	PML	chr6:144387931-144388666	GM12878	blood:	n/a	n/a
49	EP300	chr6:144388048-144388517	GM12878	blood:	n/a	chr6:144388188-144388202 chr6:144388414-144388428
50	SPI1	chr6:144387976-144388505	GM12878	blood:	n/a	chr6:144388193-144388202

No.	Distal block	Cell Line	Cell type
1	chr6:144384404..144388265-chr6:144412934..144418087,11	K562	blood:
2	chr6:144386007..144389001-chr6:144539786..144541927,2	MCF-7	breast:
3	chr6:143848305..143850454-chr6:144386141..144388297,2	MCF-7	breast:
4	chr6:144387892..144390922-chr6:144392933..144394660,3	K562	blood:

Variant related genes	Relation type
PLAGL1	TF binding region
ENSG00000169976	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144386600-144388200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:144386800-144388200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:144386800-144388200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:144387400-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:144387400-144388800	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:144387600-144388600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:144387800-144388200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:144388000-144388200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:144388000-144388200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:144388000-144388200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:144388000-144388200	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:144388000-144388200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:144388000-144388400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:144388000-144388400	Enhancers	K562	blood
18	chr6:144388000-144388600	Enhancers	Fetal Thymus	thymus
19	chr6:144388000-144388600	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:144388000-144388600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:144388000-144389400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links